PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46301-46350 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.0000 | 78.3550 | 0 | 0 | 8 | 42 | 3 | 7.1429 | |
| cchapple-custom | INDEL | D6_15 | map_siren | homalt | 96.5251 | 96.1538 | 96.8992 | 78.3557 | 125 | 5 | 125 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | * | hetalt | 90.3216 | 84.5735 | 96.9081 | 78.3569 | 9468 | 1727 | 4294 | 137 | 135 | 98.5401 | |
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | * | 98.7276 | 98.8840 | 98.5716 | 78.3574 | 6557 | 74 | 6556 | 95 | 18 | 18.9474 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| astatham-gatk | SNP | * | map_l125_m0_e0 | * | 93.0056 | 87.2530 | 99.5702 | 78.3613 | 16914 | 2471 | 16911 | 73 | 29 | 39.7260 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8272 | 88.3721 | 100.0000 | 78.3641 | 76 | 10 | 82 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | * | 95.9902 | 97.4706 | 94.5540 | 78.3647 | 28593 | 742 | 28335 | 1632 | 115 | 7.0466 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | het | 96.9503 | 96.4187 | 97.4878 | 78.3661 | 18200 | 676 | 18200 | 469 | 150 | 31.9829 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4656 | 99.3773 | 99.5540 | 78.3693 | 6064 | 38 | 6027 | 27 | 7 | 25.9259 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | * | 89.2398 | 81.7300 | 98.2693 | 78.3708 | 59175 | 13228 | 59164 | 1042 | 84 | 8.0614 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6636 | 99.8179 | 99.5098 | 78.3746 | 548 | 1 | 609 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | homalt | 96.9441 | 94.3524 | 99.6823 | 78.3751 | 1253 | 75 | 1255 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.3784 | 8 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 82.3529 | 77.7778 | 87.5000 | 78.3784 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 63.1579 | 54.5455 | 75.0000 | 78.3784 | 6 | 5 | 6 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.5000 | 87.5000 | 87.5000 | 78.3784 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.3784 | 14 | 4 | 16 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.8485 | 99.5662 | 85.2412 | 78.3800 | 918 | 4 | 901 | 156 | 95 | 60.8974 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002compoundhet | homalt | 93.1153 | 98.9691 | 87.9154 | 78.3801 | 288 | 3 | 291 | 40 | 38 | 95.0000 | |
| ckim-gatk | SNP | ti | map_l100_m2_e1 | * | 90.0482 | 82.8877 | 98.5628 | 78.3843 | 41017 | 8468 | 41010 | 598 | 70 | 11.7057 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 78.3883 | 59 | 1 | 59 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | * | 93.0563 | 96.9343 | 89.4767 | 78.3907 | 15525 | 491 | 15475 | 1820 | 120 | 6.5934 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | het | 97.9431 | 98.3732 | 97.5168 | 78.3908 | 6833 | 113 | 6833 | 174 | 33 | 18.9655 | |
| jpowers-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 95.3105 | 91.9315 | 98.9474 | 78.3927 | 1128 | 99 | 1128 | 12 | 8 | 66.6667 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | * | 96.3459 | 96.2620 | 96.4300 | 78.3975 | 31006 | 1204 | 31009 | 1148 | 531 | 46.2544 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | * | 98.9629 | 98.2990 | 99.6357 | 78.3979 | 4103 | 71 | 4103 | 15 | 6 | 40.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.3981 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.4000 | 25 | 5 | 27 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 18.3177 | 25.9009 | 14.1693 | 78.4001 | 345 | 987 | 365 | 2211 | 26 | 1.1759 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | het | 97.8428 | 96.5178 | 99.2046 | 78.4007 | 2744 | 99 | 2744 | 22 | 10 | 45.4545 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.4024 | 74 | 0 | 73 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.3504 | 84.7561 | 81.9905 | 78.4033 | 139 | 25 | 173 | 38 | 34 | 89.4737 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | het | 78.5726 | 72.8313 | 85.2966 | 78.4054 | 10184 | 3799 | 10181 | 1755 | 57 | 3.2479 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | * | 79.3554 | 74.4800 | 84.9139 | 78.4079 | 12281 | 4208 | 12276 | 2181 | 537 | 24.6217 | |
| ckim-gatk | SNP | ti | map_l100_m2_e0 | * | 89.9645 | 82.7516 | 98.5549 | 78.4080 | 40516 | 8445 | 40509 | 594 | 70 | 11.7845 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e1 | het | 96.9708 | 96.4374 | 97.5102 | 78.4083 | 18407 | 680 | 18407 | 470 | 150 | 31.9149 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6764 | 99.6119 | 99.7409 | 78.4116 | 770 | 3 | 770 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | het | 97.4110 | 96.2722 | 98.5771 | 78.4124 | 2221 | 86 | 2217 | 32 | 4 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4559 | 95.1485 | 89.9115 | 78.4139 | 3844 | 196 | 3556 | 399 | 354 | 88.7218 | |
| jli-custom | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||