PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45401-45450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.8603 | 97.9032 | 99.8363 | 77.0646 | 607 | 13 | 610 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | HG002compoundhet | het | 96.6766 | 98.1925 | 95.2069 | 77.0708 | 4020 | 74 | 3774 | 190 | 179 | 94.2105 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | homalt | 77.3850 | 63.3624 | 99.3781 | 77.0744 | 799 | 462 | 799 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 31.4024 | 23.6715 | 46.6321 | 77.0784 | 98 | 316 | 90 | 103 | 93 | 90.2913 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | het | 96.0557 | 97.2739 | 94.8677 | 77.0814 | 27618 | 774 | 27653 | 1496 | 342 | 22.8610 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 25.0000 | 16.2162 | 54.5455 | 77.0833 | 6 | 31 | 6 | 5 | 4 | 80.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | homalt | 61.9730 | 44.9065 | 99.9639 | 77.0833 | 8305 | 10189 | 8305 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 77.0833 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.0842 | 545 | 1 | 545 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | ti | map_l100_m0_e0 | het | 88.3269 | 79.3034 | 99.6674 | 77.0849 | 11089 | 2894 | 11086 | 37 | 16 | 43.2432 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e1 | het | 99.2226 | 99.3137 | 99.1317 | 77.0880 | 18956 | 131 | 18952 | 166 | 34 | 20.4819 | |
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 8.3916 | 12.7660 | 6.2500 | 77.0883 | 6 | 41 | 6 | 90 | 75 | 83.3333 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0769 | 100.0000 | 96.2264 | 77.0893 | 153 | 0 | 153 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 79.7203 | 87.6923 | 73.0769 | 77.0925 | 57 | 8 | 76 | 28 | 3 | 10.7143 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.4538 | 73.6260 | 75.3005 | 77.0932 | 69539 | 24910 | 69470 | 22787 | 21717 | 95.3043 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 9.7561 | 77.0950 | 0 | 0 | 4 | 37 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e1 | * | 99.1904 | 99.3389 | 99.0424 | 77.0978 | 20586 | 137 | 20582 | 199 | 37 | 18.5930 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | het | 96.1485 | 92.6948 | 99.8695 | 77.1012 | 3058 | 241 | 3061 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.5728 | 98.9160 | 96.2656 | 77.1021 | 365 | 4 | 464 | 18 | 18 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | homalt | 98.6835 | 97.7180 | 99.6683 | 77.1071 | 1199 | 28 | 1202 | 4 | 2 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.4762 | 82.6087 | 100.0000 | 77.1084 | 19 | 4 | 19 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4506 | 90.1515 | 99.1803 | 77.1107 | 119 | 13 | 121 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.9254 | 60.6557 | 67.5676 | 77.1134 | 74 | 48 | 75 | 36 | 35 | 97.2222 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | het | 92.6316 | 89.7959 | 95.6522 | 77.1144 | 44 | 5 | 44 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | homalt | 99.6286 | 99.5050 | 99.7525 | 77.1148 | 1206 | 6 | 1209 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | tv | map_l125_m1_e0 | homalt | 97.7782 | 96.1263 | 99.4878 | 77.1149 | 5633 | 227 | 5633 | 29 | 7 | 24.1379 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | het | 96.7120 | 94.3650 | 99.1788 | 77.1166 | 2177 | 130 | 2174 | 18 | 2 | 11.1111 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 77.1186 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m1_e0 | * | 99.1521 | 99.1473 | 99.1569 | 77.1188 | 30348 | 261 | 30342 | 258 | 59 | 22.8682 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.2391 | 93.9189 | 79.7203 | 77.1200 | 139 | 9 | 114 | 29 | 29 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.6502 | 90.5512 | 99.1379 | 77.1203 | 115 | 12 | 115 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.1542 | 99.4744 | 98.8359 | 77.1224 | 9085 | 48 | 9085 | 107 | 10 | 9.3458 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.1542 | 99.4744 | 98.8359 | 77.1224 | 9085 | 48 | 9085 | 107 | 10 | 9.3458 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2478 | 94.4444 | 94.0520 | 77.1259 | 272 | 16 | 253 | 16 | 12 | 75.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8501 | 97.8723 | 99.8476 | 77.1269 | 1334 | 29 | 1310 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2670 | 98.6631 | 99.8783 | 77.1278 | 6568 | 89 | 6568 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | homalt | 96.6127 | 93.9349 | 99.4477 | 77.1281 | 3841 | 248 | 3781 | 21 | 16 | 76.1905 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.9226 | 98.5770 | 79.3467 | 77.1325 | 762 | 11 | 753 | 196 | 156 | 79.5918 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3235 | 99.6859 | 98.9637 | 77.1327 | 952 | 3 | 955 | 10 | 1 | 10.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | het | 76.7833 | 64.0379 | 95.8629 | 77.1351 | 812 | 456 | 811 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 20.1854 | 11.4278 | 86.3881 | 77.1411 | 437 | 3387 | 641 | 101 | 85 | 84.1584 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | het | 96.3156 | 96.0340 | 96.5990 | 77.1422 | 20364 | 841 | 20365 | 717 | 214 | 29.8466 | |