PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45301-45350 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 76.9231 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_siren | homalt | 85.4475 | 90.0000 | 81.3333 | 76.9231 | 117 | 13 | 122 | 28 | 4 | 14.2857 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 57.2597 | 41.7910 | 90.9091 | 76.9231 | 28 | 39 | 30 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8580 | 58.1818 | 93.9394 | 76.9231 | 32 | 23 | 31 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 76.9231 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 76.9231 | 2 | 1 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 76.9231 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7158 | 97.4490 | 97.9841 | 76.9231 | 2101 | 55 | 2090 | 43 | 21 | 48.8372 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.9231 | 25 | 5 | 27 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 76.9231 | 0 | 0 | 0 | 24 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5649 | 94.0520 | 99.2157 | 76.9231 | 253 | 16 | 253 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_siren | het | 83.7074 | 75.1996 | 94.3858 | 76.9241 | 3390 | 1118 | 3396 | 202 | 141 | 69.8020 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | het | 96.7900 | 99.7414 | 94.0082 | 76.9260 | 10415 | 27 | 10308 | 657 | 13 | 1.9787 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4485 | 99.0842 | 99.8155 | 76.9264 | 541 | 5 | 541 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9854 | 96.3753 | 91.7112 | 76.9278 | 452 | 17 | 343 | 31 | 12 | 38.7097 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.0039 | 92.7039 | 99.5475 | 76.9311 | 216 | 17 | 220 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.5974 | 85.2531 | 87.9848 | 76.9339 | 1162 | 201 | 1157 | 158 | 144 | 91.1392 | |
| dgrover-gatk | SNP | ti | map_l150_m1_e0 | * | 99.2284 | 99.1782 | 99.2787 | 76.9359 | 19550 | 162 | 19546 | 142 | 35 | 24.6479 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3734 | 80.4048 | 98.0952 | 76.9380 | 1748 | 426 | 1751 | 34 | 4 | 11.7647 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0199 | 98.6449 | 99.3978 | 76.9388 | 6333 | 87 | 6272 | 38 | 24 | 63.1579 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | het | 76.7082 | 63.8535 | 96.0432 | 76.9422 | 802 | 454 | 801 | 33 | 18 | 54.5455 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 63.1329 | 71.2580 | 56.6710 | 76.9439 | 895 | 361 | 1304 | 997 | 490 | 49.1474 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | het | 97.4629 | 96.2864 | 98.6685 | 76.9451 | 2152 | 83 | 2149 | 29 | 2 | 6.8966 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.9523 | 50.2994 | 91.6515 | 76.9456 | 504 | 498 | 505 | 46 | 8 | 17.3913 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | homalt | 99.6707 | 99.7525 | 99.5892 | 76.9508 | 1209 | 3 | 1212 | 5 | 4 | 80.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 76.9517 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | het | 94.2838 | 90.1042 | 98.8701 | 76.9531 | 173 | 19 | 175 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5944 | 99.5794 | 99.6093 | 76.9540 | 6629 | 28 | 6629 | 26 | 6 | 23.0769 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4331 | 98.7825 | 96.1201 | 76.9651 | 4706 | 58 | 4707 | 190 | 22 | 11.5789 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9663 | 41 | 0 | 41 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | * | 99.0401 | 99.0440 | 99.0361 | 76.9678 | 12640 | 122 | 12638 | 123 | 30 | 24.3902 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.9697 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | homalt | 99.6709 | 99.8350 | 99.5074 | 76.9711 | 1210 | 2 | 1212 | 6 | 3 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0596 | 99.8095 | 98.3209 | 76.9759 | 524 | 1 | 527 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.3168 | 83.7696 | 84.8712 | 76.9763 | 800 | 155 | 791 | 141 | 92 | 65.2482 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6425 | 98.1293 | 99.1611 | 76.9773 | 2413 | 46 | 2364 | 20 | 11 | 55.0000 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | * | 97.9545 | 98.7522 | 97.1696 | 76.9826 | 46140 | 583 | 46140 | 1344 | 275 | 20.4613 | |