PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44901-44950 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | * | 99.2283 | 99.3662 | 99.0908 | 76.3631 | 30415 | 194 | 30409 | 279 | 34 | 12.1864 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.7761 | 28.8462 | 100.0000 | 76.3636 | 15 | 37 | 13 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.5770 | 82.0514 | 93.9006 | 76.3684 | 45646 | 9985 | 45754 | 2972 | 322 | 10.8345 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | homalt | 97.8012 | 96.0000 | 99.6714 | 76.3723 | 16680 | 695 | 16681 | 55 | 21 | 38.1818 | |
| eyeh-varpipe | INDEL | D1_5 | * | hetalt | 58.3169 | 41.7179 | 96.8535 | 76.3736 | 4274 | 5971 | 5356 | 174 | 162 | 93.1034 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.7100 | 92.6174 | 96.8992 | 76.3736 | 138 | 11 | 125 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5329 | 99.6333 | 99.4326 | 76.3741 | 2989 | 11 | 2979 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2535 | 93.7662 | 98.8764 | 76.3769 | 361 | 24 | 352 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | het | 95.8374 | 96.6850 | 95.0046 | 76.3778 | 12454 | 427 | 12457 | 655 | 335 | 51.1450 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | homalt | 99.7787 | 99.7306 | 99.8269 | 76.3785 | 4072 | 11 | 4037 | 7 | 3 | 42.8571 | |
| hfeng-pmm1 | SNP | tv | map_l125_m0_e0 | het | 98.9058 | 98.5912 | 99.2223 | 76.3803 | 4339 | 62 | 4338 | 34 | 9 | 26.4706 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e1 | * | 98.2162 | 98.7046 | 97.7326 | 76.3818 | 30173 | 396 | 30173 | 700 | 158 | 22.5714 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.3819 | 93 | 6 | 94 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e0 | homalt | 98.9410 | 98.2306 | 99.6618 | 76.3825 | 11492 | 207 | 11492 | 39 | 26 | 66.6667 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2010 | 96.5997 | 95.8055 | 76.3827 | 2983 | 105 | 3015 | 132 | 4 | 3.0303 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | homalt | 97.8213 | 96.0358 | 99.6744 | 76.3853 | 16837 | 695 | 16838 | 55 | 21 | 38.1818 | |
| ckim-dragen | SNP | ti | map_l150_m1_e0 | * | 98.2015 | 98.8636 | 97.5482 | 76.3868 | 19488 | 224 | 19495 | 490 | 66 | 13.4694 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | homalt | 62.9630 | 45.9459 | 100.0000 | 76.3889 | 17 | 20 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1596 | 94.9559 | 99.4681 | 76.3893 | 753 | 40 | 748 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | map_l150_m2_e1 | homalt | 98.9483 | 98.2413 | 99.6655 | 76.3898 | 11619 | 208 | 11619 | 39 | 26 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 76.3916 | 127 | 33 | 123 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3450 | 94.8485 | 95.8466 | 76.3952 | 313 | 17 | 300 | 13 | 7 | 53.8462 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 14.6341 | 100.0000 | 7.8947 | 76.3975 | 3 | 0 | 3 | 35 | 35 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5826 | 97.4026 | 97.7633 | 76.4020 | 2100 | 56 | 2098 | 48 | 23 | 47.9167 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | het | 99.2203 | 99.1589 | 99.2819 | 76.4022 | 7191 | 61 | 7189 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4426 | 96.6102 | 90.4762 | 76.4045 | 57 | 2 | 57 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 80.2213 | 68.4783 | 96.8254 | 76.4045 | 63 | 29 | 61 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.6087 | 70.3704 | 100.0000 | 76.4045 | 19 | 8 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 76.4045 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9932 | 98.5767 | 99.4132 | 76.4066 | 2424 | 35 | 2372 | 14 | 10 | 71.4286 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 89.2479 | 85.0979 | 93.8235 | 76.4116 | 5739 | 1005 | 5742 | 378 | 40 | 10.5820 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.1909 | 86.1224 | 49.9033 | 76.4142 | 422 | 68 | 258 | 259 | 240 | 92.6641 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | het | 99.2305 | 99.1698 | 99.2913 | 76.4144 | 7287 | 61 | 7285 | 52 | 5 | 9.6154 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8489 | 98.6987 | 98.9996 | 76.4157 | 2427 | 32 | 2375 | 24 | 15 | 62.5000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1260 | 92.3762 | 93.8881 | 76.4157 | 3732 | 308 | 3441 | 224 | 202 | 90.1786 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 76.4158 | 0 | 1 | 0 | 304 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 76.4158 | 0 | 1 | 0 | 304 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1677 | 87.2093 | 100.0000 | 76.4205 | 75 | 11 | 83 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1677 | 87.2093 | 100.0000 | 76.4205 | 75 | 11 | 83 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.5510 | 90.3346 | 99.1803 | 76.4251 | 243 | 26 | 242 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8362 | 99.8597 | 99.8128 | 76.4258 | 2135 | 3 | 2133 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1009 | 98.8095 | 99.3939 | 76.4286 | 166 | 2 | 164 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.6782 | 96.9631 | 86.9396 | 76.4300 | 894 | 28 | 892 | 134 | 128 | 95.5224 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | het | 99.0220 | 98.9321 | 99.1120 | 76.4302 | 4354 | 47 | 4353 | 39 | 3 | 7.6923 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.0060 | 92.0824 | 66.1719 | 76.4316 | 849 | 73 | 847 | 433 | 45 | 10.3926 | |