PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43551-43600 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 74.5401 | 60.5690 | 96.8890 | 74.8497 | 6728 | 4380 | 6727 | 216 | 42 | 19.4444 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0752 | 97.9853 | 98.1651 | 74.8500 | 535 | 11 | 535 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e0 | * | 98.9506 | 98.8287 | 99.0728 | 74.8529 | 11222 | 133 | 11220 | 105 | 61 | 58.0952 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | homalt | 99.4033 | 98.9657 | 99.8448 | 74.8531 | 11578 | 121 | 11578 | 18 | 11 | 61.1111 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5292 | 96.8794 | 96.1816 | 74.8551 | 1366 | 44 | 1335 | 53 | 43 | 81.1321 | |
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l150_m2_e1 | het | 98.9202 | 98.5478 | 99.2954 | 74.8618 | 12826 | 189 | 12824 | 91 | 30 | 32.9670 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 57.4173 | 46.1301 | 76.0173 | 74.8627 | 8380 | 9786 | 10368 | 3271 | 2260 | 69.0920 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 57.4173 | 46.1301 | 76.0173 | 74.8627 | 8380 | 9786 | 10368 | 3271 | 2260 | 69.0920 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | het | 97.0973 | 97.6575 | 96.5435 | 74.8637 | 3085 | 74 | 2849 | 102 | 61 | 59.8039 | |
| rpoplin-dv42 | SNP | tv | map_l150_m2_e1 | * | 98.9641 | 98.8437 | 99.0847 | 74.8658 | 11369 | 133 | 11367 | 105 | 61 | 58.0952 | |
| ckim-gatk | SNP | tv | map_siren | het | 95.0179 | 92.6002 | 97.5652 | 74.8662 | 26492 | 2117 | 26487 | 661 | 26 | 3.9334 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | homalt | 77.8495 | 63.7436 | 99.9724 | 74.8690 | 7240 | 4118 | 7240 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l150_m2_e0 | * | 99.3568 | 98.9326 | 99.7847 | 74.8691 | 31512 | 340 | 31512 | 68 | 32 | 47.0588 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.1753 | 97.5423 | 92.9204 | 74.8692 | 1786 | 45 | 1785 | 136 | 12 | 8.8235 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.6811 | 99.6718 | 97.7099 | 74.8698 | 911 | 3 | 896 | 21 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.9180 | 97.0394 | 96.7968 | 74.8717 | 4851 | 148 | 4835 | 160 | 117 | 73.1250 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.9180 | 97.0394 | 96.7968 | 74.8717 | 4851 | 148 | 4835 | 160 | 117 | 73.1250 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.1661 | 96.2430 | 98.1070 | 74.8751 | 2075 | 81 | 2073 | 40 | 13 | 32.5000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.7291 | 91.0714 | 98.6928 | 74.8768 | 153 | 15 | 151 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 53.6602 | 38.0295 | 91.1060 | 74.8783 | 799 | 1302 | 799 | 78 | 48 | 61.5385 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | het | 99.0880 | 98.7264 | 99.4522 | 74.8794 | 19070 | 246 | 19064 | 105 | 27 | 25.7143 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 74.8818 | 478 | 0 | 478 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 46.0578 | 34.1432 | 70.7450 | 74.8821 | 1321 | 2548 | 1168 | 483 | 147 | 30.4348 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8865 | 95.8225 | 93.9686 | 74.8872 | 2959 | 129 | 2929 | 188 | 79 | 42.0213 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 73.6686 | 98.2908 | 58.9111 | 74.8889 | 4773 | 83 | 4826 | 3366 | 126 | 3.7433 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.2079 | 95.2756 | 91.2281 | 74.8899 | 121 | 6 | 156 | 15 | 5 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.3062 | 52.6056 | 93.4092 | 74.8938 | 3200 | 2883 | 3203 | 226 | 95 | 42.0354 | |
| ckim-dragen | SNP | * | map_l125_m2_e1 | * | 98.4159 | 99.0996 | 97.7415 | 74.8940 | 46777 | 425 | 46783 | 1081 | 120 | 11.1008 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3077 | 35.1064 | 53.2258 | 74.8988 | 66 | 122 | 66 | 58 | 49 | 84.4828 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.9551 | 95.5466 | 98.4058 | 74.9000 | 708 | 33 | 679 | 11 | 8 | 72.7273 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.0772 | 83.7398 | 97.4522 | 74.9001 | 309 | 60 | 306 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | * | 82.1492 | 71.0667 | 97.3270 | 74.9005 | 8781 | 3575 | 8775 | 241 | 126 | 52.2822 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0102 | 98.4000 | 99.6280 | 74.9024 | 2952 | 48 | 2946 | 11 | 3 | 27.2727 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.5323 | 89.9522 | 97.4093 | 74.9025 | 188 | 21 | 188 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | homalt | 99.4055 | 98.9685 | 99.8465 | 74.9037 | 11705 | 122 | 11705 | 18 | 11 | 61.1111 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 74.9049 | 66 | 7 | 66 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.3340 | 49.2754 | 92.6471 | 74.9077 | 34 | 35 | 63 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 74.9083 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.5475 | 99.3976 | 99.6979 | 74.9100 | 1320 | 8 | 1320 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | map_l150_m1_e0 | het | 99.0951 | 98.7227 | 99.4704 | 74.9167 | 12212 | 158 | 12208 | 65 | 17 | 26.1538 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.8911 | 98.2843 | 86.2787 | 74.9189 | 1203 | 21 | 1201 | 191 | 49 | 25.6545 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5093 | 99.4855 | 99.5331 | 74.9202 | 2127 | 11 | 2345 | 11 | 9 | 81.8182 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 66.5254 | 97.2739 | 50.5473 | 74.9203 | 6066 | 170 | 6280 | 6144 | 168 | 2.7344 | |
| egarrison-hhga | SNP | * | map_l150_m2_e1 | * | 99.3609 | 98.9413 | 99.7840 | 74.9205 | 31869 | 341 | 31869 | 69 | 32 | 46.3768 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3387 | 95.0659 | 95.6131 | 74.9211 | 2524 | 131 | 2659 | 122 | 56 | 45.9016 | |