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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 836 837 838 839 840 841 842 843 844 ... 1720 1721 » 41951-42000 / 86044 show all
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.2054	98.4234	100.0000	72.6469	437	7	433	0	0
bgallagher-sentieon	SNP	ti	map_l150_m0_e0	homalt	99.5462	99.3118	99.7817	72.6486	2742	19	2742	6	5	83.3333
hfeng-pmm1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8037	99.8082	99.7991	72.6490	21857	42	21857	44	44	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	60.0000	44.1176	93.7500	72.6496	30	38	30	2	2	100.0000
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	5.1744	2.8363	29.4574	72.6502	101	3460	114	273	176	64.4689
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
gduggal-bwafb	SNP	ti	map_l150_m1_e0	homalt	99.3830	98.9218	99.8485	72.6540	7248	79	7248	11	6	54.5455
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1543	99.2037	99.1050	72.6597	30895	248	30895	279	24	8.6022
anovak-vg	SNP	tv	map_l100_m1_e0	het	79.8335	92.3396	70.3109	72.6600	14236	1181	14226	6007	1268	21.1087
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6825	99.8940	99.4720	72.6656	1884	2	1884	10	8	80.0000
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	79.3428	82.9101	76.0698	72.6664	5322	1097	5404	1700	930	54.7059
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	79.3428	82.9101	76.0698	72.6664	5322	1097	5404	1700	930	54.7059
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	homalt	99.7136	99.5710	99.8566	72.6687	7660	33	7662	11	11	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	91.4497	97.5621	86.0581	72.6726	2121	53	2074	336	8	2.3810
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1951	98.6340	99.7626	72.6726	32782	454	32775	78	58	74.3590
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	85.0134	99.3714	74.2808	72.6746	4268	27	4312	1493	22	1.4735
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5688	99.2675	97.8799	72.6755	5556	41	5540	120	110	91.6667
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.6774	1884	2	1884	7	5	71.4286
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.7273	86.4407	100.0000	72.6829	51	8	56	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	83.6015	87.3211	80.1860	72.6837	13602	1975	12246	3026	728	24.0582
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9669	98.4733	99.4656	72.6845	1677	26	1675	9	2	22.2222
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.7991	95.5378	98.0941	72.6859	1670	78	1647	32	12	37.5000
gduggal-snapvard	INDEL	D16_PLUS	HG002complexvar	het	12.2286	7.0461	46.2366	72.6872	78	1029	86	100	53	53.0000
cchapple-custom	SNP	ti	map_l125_m1_e0	*	97.0755	96.9422	97.2092	72.6876	28438	897	28423	816	227	27.8186
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	*	99.3333	99.4373	99.2295	72.6907	30397	172	30393	236	42	17.7966
bgallagher-sentieon	INDEL	D6_15	map_l100_m2_e1	hetalt	95.0355	91.7808	98.5294	72.6908	67	6	67	1	0	0.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	80.2150	96.6216	68.5714	72.6918	429	15	432	198	191	96.4646
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	homalt	99.6971	99.5162	99.8786	72.6929	4114	20	4114	5	4	80.0000
dgrover-gatk	SNP	tv	map_l100_m0_e0	*	99.0852	99.1880	98.9825	72.6937	10994	90	10993	113	23	20.3540
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.7635	97.0721	98.4649	72.6946	431	13	449	7	7	100.0000
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	88.7849	97.2272	81.6917	72.6965	3822	109	3757	842	12	1.4252
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	91.2551	87.6404	95.1807	72.6974	78	11	79	4	4	100.0000
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	homalt	99.6933	99.5102	99.8771	72.6980	4063	20	4063	5	4	80.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.5673	97.1751	100.0000	72.6984	172	5	172	0	0
ltrigg-rtg1	SNP	*	map_l150_m2_e1	homalt	99.7587	99.6280	99.8898	72.7027	11783	44	11789	13	13	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.7179	97.4684	100.0000	72.7032	308	8	309	0	0
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.0712	90.9871	99.5392	72.7044	212	21	216	1	1	100.0000
gduggal-snapplat	SNP	*	map_l125_m0_e0	homalt	91.2357	83.9839	99.8583	72.7044	5637	1075	5637	8	8	100.0000
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.0446	97.3019	89.1441	72.7080	17094	474	16957	2065	141	6.8281
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.0713	96.5190	99.6743	72.7111	305	11	306	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.0144	87.4251	99.3671	72.7116	146	21	157	1	1	100.0000
eyeh-varpipe	INDEL	I6_15	map_siren	het	82.9333	77.6224	89.0244	72.7121	111	32	146	18	16	88.8889
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.0725	92.1348	98.2036	72.7124	164	14	164	3	3	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8571	97.7401	100.0000	72.7129	173	4	173	0	0
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.1413	97.5124	98.7784	72.7143	588	15	566	7	4	57.1429
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6230	99.8728	97.4042	72.7150	785	1	788	21	13	61.9048
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	56.8863	58.4740	55.3825	72.7189	797	566	818	659	497	75.4173

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