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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 834 835 836 837 838 839 840 841 842 ... 1720 1721 » 41851-41900 / 86044 show all
ghariani-varprowl	INDEL	I1_5	HG002compoundhet	het	21.0205	76.7059	12.1791	72.5111	652	198	721	5199	5126	98.5959
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6218	99.4099	99.8345	72.5123	5391	32	5430	9	0	0.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6218	99.4099	99.8345	72.5123	5391	32	5430	9	0	0.0000
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	53.8900	46.6238	63.8393	72.5153	145	166	143	81	74	91.3580
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.1367	94.4039	95.8810	72.5157	388	23	419	18	18	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	81.9563	92.6437	73.4797	72.5162	403	32	435	157	14	8.9172
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3113	99.2548	99.3680	72.5172	3596	27	3616	23	5	21.7391
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	77.1368	72.0532	82.9923	72.5173	11223	4353	45225	9268	7975	86.0488
raldana-dualsentieon	SNP	*	map_l125_m1_e0	het	98.7746	98.9539	98.5959	72.5206	28095	297	28089	400	4	1.0000
jlack-gatk	SNP	tv	map_siren	het	95.9855	99.5106	92.7015	72.5215	28469	140	28464	2241	108	4.8193
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	86.6995	85.5368	87.8943	72.5250	3099	524	3093	426	415	97.4178
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	86.2768	77.0823	97.9619	72.5253	1490	443	1490	31	29	93.5484
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.0291	98.0769	100.0000	72.5275	51	1	50	0	0
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	60.9623	54.4271	69.2810	72.5314	209	175	212	94	51	54.2553
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1639	98.4142	99.9251	72.5328	5337	86	5337	4	4	100.0000
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	78.3674	76.9841	79.8013	72.5330	485	145	482	122	85	69.6721
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.8135	99.6690	99.9585	72.5387	2409	8	2409	1	1	100.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.7431	84.7458	100.0000	72.5389	50	9	53	0	0
gduggal-bwafb	SNP	*	map_l125_m0_e0	homalt	99.3333	98.7783	99.8945	72.5403	6630	82	6630	7	6	85.7143
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	88.5028	99.3917	79.7641	72.5419	2941	18	2976	755	16	2.1192
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	80.9828	69.1181	97.7650	72.5426	12556	5610	12554	287	244	85.0174
gduggal-bwaplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.9828	69.1181	97.7650	72.5426	12556	5610	12554	287	244	85.0174
gduggal-snapplat	SNP	*	map_l150_m1_e0	homalt	92.6495	86.3745	99.9076	72.5432	9737	1536	9728	9	9	100.0000
gduggal-bwafb	SNP	tv	map_l100_m2_e0	het	98.4689	99.0556	97.8891	72.5475	15628	149	15628	337	48	14.2433
jli-custom	SNP	*	map_l100_m1_e0	hetalt	98.7952	100.0000	97.6190	72.5490	41	0	41	1	1	100.0000
jli-custom	SNP	tv	map_l100_m1_e0	hetalt	98.7952	100.0000	97.6190	72.5490	41	0	41	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
ckim-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	44.4444	100.0000	28.5714	72.5490	8	0	8	20	20	100.0000
asubramanian-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	72.5490	0	0	0	14	0	0.0000
ckim-dragen	INDEL	D16_PLUS	*	*	97.1268	97.5531	96.7043	72.5515	6618	166	6602	225	138	61.3333
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9022	98.6444	99.1614	72.5547	946	13	946	8	6	75.0000
gduggal-bwaplat	INDEL	I16_PLUS	HG002complexvar	het	60.5561	44.2105	96.0784	72.5561	294	371	294	12	5	41.6667
rpoplin-dv42	INDEL	D6_15	map_l100_m1_e0	hetalt	92.9134	86.7647	100.0000	72.5581	59	9	59	0	0
ckim-isaac	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	75.9096	68.0162	85.8757	72.5581	168	79	152	25	16	64.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5965	99.6454	97.5694	72.5584	562	2	562	14	13	92.8571
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.2240	99.4840	85.9515	72.5594	21786	113	22362	3655	3631	99.3434
gduggal-snapvard	INDEL	C16_PLUS	HG002complexvar	*	0.0000	0.0000	35.5556	72.5610	0	0	16	29	6	20.6897
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	93.3333	93.3333	93.3333	72.5610	42	3	42	3	2	66.6667
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9917	98.3416	99.6503	72.5659	593	10	570	2	2	100.0000
gduggal-snapplat	INDEL	*	HG002compoundhet	*	42.2745	36.5854	50.0587	72.5688	10961	18999	11522	11495	5404	47.0117
hfeng-pmm2	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.5691	2211	10	2211	12	4	33.3333
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.7277	98.8115	98.6441	72.5709	1164	14	1164	16	16	100.0000
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	86.8721	77.5325	98.7699	72.5739	1370	397	1365	17	15	88.2353
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0294	99.2360	96.8517	72.5744	1169	9	1169	38	38	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	97.4626	97.6139	97.3118	72.5745	900	22	905	25	15	60.0000
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.2110	98.7855	99.6402	72.5769	3579	44	3600	13	3	23.0769

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