PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 831 832 833 834 835 836 837 838 839 ... 1720 1721 » 41701-41750 / 86044 show all
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6857	97.8861	99.4985	72.2979	1667	36	1984	10	2	20.0000
raldana-dualsentieon	SNP	ti	map_l125_m1_e0	het	98.7264	98.8941	98.5593	72.2989	18064	202	18060	264	3	1.1364
ghariani-varprowl	SNP	*	map_l150_m1_e0	homalt	98.8738	98.1283	99.6307	72.3027	11062	211	11062	41	25	60.9756
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6989	94.3463	97.0909	72.3061	267	16	267	8	8	100.0000
jmaeng-gatk	SNP	tv	map_l100_m0_e0	homalt	75.4210	60.5564	99.9571	72.3081	2329	1517	2329	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8615	99.7820	99.9410	72.3104	16938	37	16938	10	6	60.0000
ckim-isaac	SNP	ti	map_l125_m2_e0	*	75.2532	60.4006	99.7925	72.3144	18276	11982	18276	38	7	18.4211
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	98.9011	100.0000	72.3149	540	6	531	0	0
hfeng-pmm3	SNP	ti	map_l125_m2_e1	het	99.4518	99.3346	99.5693	72.3168	18960	127	18956	82	8	9.7561
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.1114	98.9086	99.3151	72.3170	725	8	725	5	5	100.0000
hfeng-pmm3	SNP	tv	map_l125_m0_e0	homalt	99.4597	99.4597	99.4597	72.3171	2209	12	2209	12	4	33.3333
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.5183	97.1076	97.9326	72.3189	3458	103	3458	73	57	78.0822
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.9145	99.4543	98.3806	72.3198	729	4	729	12	12	100.0000
jlack-gatk	SNP	tv	map_l150_m2_e0	homalt	99.1124	98.4570	99.7766	72.3207	4020	63	4020	9	6	66.6667
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.9550	99.7815	94.2842	72.3244	1827	4	1831	111	5	4.5045
hfeng-pmm3	SNP	*	map_l125_m2_e1	het	99.4275	99.3320	99.5233	72.3246	29442	198	29436	141	13	9.2199
eyeh-varpipe	SNP	tv	map_l100_m2_e1	het	96.0176	99.7490	92.5553	72.3251	15898	40	15702	1263	16	1.2668
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	93.9690	91.1857	96.9275	72.3266	14204	1373	12524	397	332	83.6272
ckim-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.2889	98.3993	98.1788	72.3290	3504	57	3504	65	45	69.2308
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.7197	96.1682	97.2776	72.3295	6174	246	6146	172	65	37.7907
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.7197	96.1682	97.2776	72.3295	6174	246	6146	172	65	37.7907
ckim-isaac	SNP	ti	map_l125_m2_e1	*	75.3035	60.4665	99.7895	72.3331	18484	12085	18484	39	8	20.5128
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	hetalt	97.5400	95.2663	99.9249	72.3364	1288	64	1331	1	1	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e1	het	99.3837	99.3272	99.4402	72.3386	10482	71	10480	59	5	8.4746
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6403	99.3747	97.9167	72.3397	5562	35	5546	118	106	89.8305
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	72.2222	56.5217	100.0000	72.3404	13	10	13	0	0
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	84.0000	87.5000	80.7692	72.3404	21	3	21	5	5	100.0000
raldana-dualsentieon	INDEL	D6_15	map_siren	hetalt	95.7895	91.9192	100.0000	72.3404	91	8	91	0	0
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	90.7407	83.0508	100.0000	72.3404	49	10	52	0	0
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	2.5316	100.0000	1.2821	72.3404	1	0	1	77	2	2.5974
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e0	het	77.4194	66.6667	92.3077	72.3404	12	6	12	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	map_l100_m2_e1	het	77.4194	66.6667	92.3077	72.3404	12	6	12	1	0	0.0000
gduggal-bwaplat	INDEL	*	tech_badpromoters	het	80.0000	66.6667	100.0000	72.3404	26	13	26	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.6903	99.1511	98.2338	72.3424	1168	10	1168	21	21	100.0000
gduggal-snapvard	INDEL	C6_15	HG002complexvar	*	72.1017	100.0000	56.3743	72.3480	4	0	482	373	150	40.2145
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3506	99.1379	99.5643	72.3494	460	4	457	2	0	0.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.7732	97.1519	98.4026	72.3498	307	9	308	5	5	100.0000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	84.9558	90.5660	80.0000	72.3502	48	5	48	12	12	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	*	99.0365	98.2955	99.7888	72.3511	19376	336	19376	41	23	56.0976
gduggal-bwaplat	SNP	*	map_l100_m2_e0	homalt	75.9766	61.2688	99.9763	72.3553	16863	10660	16851	4	4	100.0000
asubramanian-gatk	INDEL	C6_15	HG002complexvar	het	0.0000	100.0000	0.0000	72.3577	4	0	0	68	0	0.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	47.6817	34.6405	76.4706	72.3577	53	100	52	16	16	100.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	50.2132	87.3684	35.2307	72.3584	581	84	588	1081	1065	98.5199
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.3618	162	16	162	3	3	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.4606	91.0112	98.1818	72.3618	162	16	162	3	3	100.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	77.8216	78.3784	77.2727	72.3618	58	16	85	25	25	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge