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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 830 831 832 833 834 835 836 837 838 ... 1720 1721 » 41651-41700 / 86044 show all
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	72.2222	5	0	5	0	0
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	95.4545	91.3043	100.0000	72.2222	21	2	20	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.7431	84.7458	100.0000	72.2222	50	9	55	0	0
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	72.2222	5	0	5	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	72.2222	5	0	5	0	0
raldana-dualsentieon	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.9010	100.0000	95.8884	72.2268	653	0	653	28	27	96.4286
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7814	99.6361	99.9271	72.2301	1369	5	1370	1	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5356	98.2273	98.8458	72.2319	942	17	942	11	9	81.8182
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	84.2832	73.2558	99.2188	72.2343	126	46	127	1	1	100.0000
ghariani-varprowl	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.4227	98.4802	90.6863	72.2353	17301	267	17390	1786	11	0.6159
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	96.4143	93.5567	99.4521	72.2433	363	25	363	2	1	50.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.9391	95.7447	88.4244	72.2445	585	26	550	72	67	93.0556
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	75.0034	74.5856	75.4258	72.2485	270	92	310	101	98	97.0297
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2272	90.2128	96.4502	72.2490	1272	138	1277	47	13	27.6596
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	82.0654	92.0904	74.0088	72.2494	163	14	168	59	57	96.6102
dgrover-gatk	INDEL	I16_PLUS	*	homalt	97.7415	99.8078	95.7591	72.2497	1558	3	1558	69	66	95.6522
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.8376	96.7213	94.9698	72.2501	472	16	472	25	21	84.0000
gduggal-snapvard	INDEL	C6_15	HG002compoundhet	het	0.0000	0.0000	25.8760	72.2513	0	0	96	275	70	25.4545
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	51.5638	41.4948	68.0851	72.2550	161	227	160	75	74	98.6667
eyeh-varpipe	SNP	tv	map_l100_m2_e0	het	96.0096	99.7465	92.5426	72.2574	15737	40	15549	1253	16	1.2769
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	homalt	99.6938	99.4670	99.9217	72.2586	7652	41	7652	6	6	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.0725	92.1348	98.2036	72.2591	164	14	164	3	3	100.0000
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	93.8020	94.0511	93.5541	72.2618	5739	363	5762	397	212	53.4005
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
qzeng-custom	SNP	tv	map_siren	het	91.9469	86.2561	98.4416	72.2639	24677	3932	24636	390	264	67.6923
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.1296	90.2834	98.3180	72.2646	669	72	643	11	9	81.8182
ltrigg-rtg2	SNP	tv	map_l250_m1_e0	het	95.0732	90.7107	99.8765	72.2650	1621	166	1618	2	0	0.0000
qzeng-custom	SNP	*	map_l125_m0_e0	homalt	77.7882	64.0644	98.9949	72.2676	4300	2412	4235	43	42	97.6744
qzeng-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	98.5273	99.1969	97.8668	72.2743	4817	39	4863	106	20	18.8679
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.9533	95.6873	98.2533	72.2760	710	32	675	12	7	58.3333
hfeng-pmm3	SNP	ti	map_l125_m2_e0	het	99.4510	99.3325	99.5698	72.2770	18750	126	18746	81	8	9.8765
raldana-dualsentieon	SNP	*	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	72.2772	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	72.2772	28	2	28	0	0
hfeng-pmm3	SNP	*	map_l125_m2_e0	het	99.4247	99.3281	99.5214	72.2786	29121	197	29115	140	13	9.2857
jlack-gatk	SNP	tv	map_l150_m2_e1	homalt	99.1112	98.4519	99.7794	72.2800	4070	64	4070	9	6	66.6667
cchapple-custom	SNP	*	map_l100_m1_e0	het	96.8285	97.8593	95.8192	72.2809	44388	971	44440	1939	401	20.6808
hfeng-pmm3	SNP	tv	map_l125_m2_e0	het	99.3771	99.3201	99.4342	72.2814	10371	71	10369	59	5	8.4746
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.3538	98.9011	99.8106	72.2835	540	6	527	1	1	100.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.7552	97.5410	100.0000	72.2864	119	3	120	0	0
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3181	99.2492	99.3870	72.2871	1322	10	1297	8	6	75.0000
gduggal-bwaplat	SNP	*	map_l100_m2_e1	homalt	76.1334	61.4729	99.9766	72.2874	17087	10709	17075	4	4	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6683	99.4621	99.8754	72.2887	2404	13	2404	3	3	100.0000
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.1923	94.7368	95.6522	72.2892	18	1	22	1	1	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	72.2892	19	0	23	0	0
gduggal-snapplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	37.3854	26.5403	63.2184	72.2930	56	155	55	32	21	65.6250
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	82.6590	71.5000	97.9452	72.2960	143	57	143	3	3	100.0000
astatham-gatk	SNP	*	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	72.2973	41	1	41	0	0
astatham-gatk	SNP	tv	map_l100_m2_e0	hetalt	98.7952	97.6190	100.0000	72.2973	41	1	41	0	0
bgallagher-sentieon	SNP	*	map_l100_m2_e1	hetalt	97.6190	95.3488	100.0000	72.2973	41	2	41	0	0
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	hetalt	97.6190	95.3488	100.0000	72.2973	41	2	41	0	0

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