PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39751-39800 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 69.7674 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.7674 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.7674 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 16.6415 | 14.6667 | 19.2308 | 69.7674 | 11 | 64 | 10 | 42 | 38 | 90.4762 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.3651 | 67.5676 | 96.1538 | 69.7674 | 25 | 12 | 25 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | homalt | 99.4329 | 99.0693 | 99.7991 | 69.7738 | 5961 | 56 | 5961 | 12 | 12 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.9877 | 74.1728 | 96.7962 | 69.7744 | 4954 | 1725 | 4955 | 164 | 54 | 32.9268 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6971 | 98.2332 | 93.2886 | 69.7769 | 278 | 5 | 278 | 20 | 20 | 100.0000 | |
| astatham-gatk | SNP | ti | map_l100_m2_e1 | * | 92.0971 | 85.4623 | 99.8489 | 69.7778 | 42291 | 7194 | 42284 | 64 | 36 | 56.2500 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | homalt | 99.7923 | 99.8006 | 99.7840 | 69.7785 | 6005 | 12 | 6005 | 13 | 5 | 38.4615 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6042 | 99.3980 | 99.8112 | 69.7820 | 2642 | 16 | 2643 | 5 | 3 | 60.0000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | * | 99.4445 | 99.4977 | 99.3914 | 69.7839 | 25156 | 127 | 25152 | 154 | 29 | 18.8312 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 69.7842 | 43 | 0 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l100_m2_e0 | * | 98.6634 | 99.2943 | 98.0406 | 69.7855 | 73442 | 522 | 73453 | 1468 | 152 | 10.3542 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | * | 92.0782 | 85.4292 | 99.8496 | 69.7884 | 41827 | 7134 | 41820 | 63 | 36 | 57.1429 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6854 | 91.9137 | 95.5267 | 69.7908 | 682 | 60 | 662 | 31 | 19 | 61.2903 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.4707 | 97.2414 | 97.7011 | 69.7917 | 423 | 12 | 425 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 47.5921 | 56.0000 | 41.3793 | 69.7917 | 14 | 11 | 12 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.0639 | 76.7320 | 97.9798 | 69.7941 | 1174 | 356 | 1164 | 24 | 19 | 79.1667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.0639 | 76.7320 | 97.9798 | 69.7941 | 1174 | 356 | 1164 | 24 | 19 | 79.1667 | |
| gduggal-bwavard | SNP | * | map_siren | het | 96.2598 | 97.0810 | 95.4524 | 69.7950 | 88335 | 2656 | 87233 | 4156 | 368 | 8.8547 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.0682 | 92.1182 | 43.4716 | 69.7982 | 561 | 48 | 566 | 736 | 726 | 98.6413 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2882 | 97.5464 | 95.0621 | 69.7999 | 2942 | 74 | 2984 | 155 | 4 | 2.5807 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4553 | 99.8906 | 99.0239 | 69.8002 | 913 | 1 | 913 | 9 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | homalt | 99.6799 | 99.4589 | 99.9020 | 69.8014 | 11212 | 61 | 11212 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9599 | 92.4574 | 99.7382 | 69.8024 | 380 | 31 | 381 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 69.8046 | 0 | 0 | 0 | 170 | 0 | 0.0000 | ||
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | * | 98.0599 | 97.7308 | 98.3912 | 69.8054 | 70760 | 1643 | 70762 | 1157 | 328 | 28.3492 | |
| gduggal-snapplat | INDEL | I1_5 | * | * | 77.0401 | 71.8692 | 83.0128 | 69.8058 | 108281 | 42383 | 109381 | 22383 | 1242 | 5.5489 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4666 | 99.1489 | 99.7863 | 69.8065 | 466 | 4 | 467 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.1693 | 98.6207 | 97.7221 | 69.8074 | 429 | 6 | 429 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.5286 | 73.7548 | 88.6726 | 69.8081 | 3687 | 1312 | 3781 | 483 | 366 | 75.7764 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 80.5286 | 73.7548 | 88.6726 | 69.8081 | 3687 | 1312 | 3781 | 483 | 366 | 75.7764 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.3336 | 95.4207 | 99.3247 | 69.8100 | 11023 | 529 | 11031 | 75 | 43 | 57.3333 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.3336 | 95.4207 | 99.3247 | 69.8100 | 11023 | 529 | 11031 | 75 | 43 | 57.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4903 | 70.1987 | 100.0000 | 69.8113 | 106 | 45 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2960 | 99.5274 | 99.0657 | 69.8134 | 45486 | 216 | 45486 | 429 | 30 | 6.9930 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2960 | 99.5274 | 99.0657 | 69.8134 | 45486 | 216 | 45486 | 429 | 30 | 6.9930 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | het | 98.6534 | 98.7699 | 98.5371 | 69.8191 | 13811 | 172 | 13808 | 205 | 2 | 0.9756 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | homalt | 99.7942 | 99.8024 | 99.7860 | 69.8227 | 6062 | 12 | 6062 | 13 | 5 | 38.4615 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.7778 | 100.0000 | 88.2845 | 69.8232 | 211 | 0 | 211 | 28 | 27 | 96.4286 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7884 | 98.3155 | 99.2658 | 69.8244 | 92858 | 1591 | 106946 | 791 | 672 | 84.9558 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | * | 98.6686 | 99.2949 | 98.0501 | 69.8284 | 74210 | 527 | 74221 | 1476 | 153 | 10.3659 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 94.5889 | 91.8145 | 97.5362 | 69.8295 | 673 | 60 | 673 | 17 | 14 | 82.3529 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 49.7946 | 72.3404 | 37.9630 | 69.8324 | 34 | 13 | 41 | 67 | 1 | 1.4925 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 76.6099 | 94.2733 | 64.5210 | 69.8327 | 4560 | 277 | 4701 | 2585 | 206 | 7.9691 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |