PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38601-38650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3658 | 97.2888 | 99.4670 | 68.3001 | 933 | 26 | 933 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | het | 38.7440 | 70.5882 | 26.6993 | 68.3093 | 600 | 250 | 546 | 1499 | 1487 | 99.1995 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4050 | 96.9403 | 99.9148 | 68.3120 | 4689 | 148 | 4689 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | homalt | 99.6712 | 99.4855 | 99.8575 | 68.3134 | 11215 | 58 | 11215 | 16 | 12 | 75.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | het | 99.0916 | 99.2132 | 98.9703 | 68.3138 | 46529 | 369 | 46518 | 484 | 7 | 1.4463 | |
| gduggal-bwavard | INDEL | I1_5 | HG002compoundhet | het | 20.0258 | 84.8235 | 11.3531 | 68.3156 | 721 | 129 | 709 | 5536 | 5451 | 98.4646 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1150 | 99.9061 | 98.3364 | 68.3163 | 1064 | 1 | 1064 | 18 | 18 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2091 | 94.5997 | 99.9664 | 68.3186 | 2978 | 170 | 2978 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.3015 | 79.4055 | 89.8409 | 68.3211 | 748 | 194 | 734 | 83 | 52 | 62.6506 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3407 | 98.9059 | 99.7792 | 68.3217 | 904 | 10 | 904 | 2 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1935 | 94.2916 | 96.1127 | 68.3224 | 16006 | 969 | 16096 | 651 | 464 | 71.2750 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1935 | 94.2916 | 96.1127 | 68.3224 | 16006 | 969 | 16096 | 651 | 464 | 71.2750 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7667 | 98.9130 | 98.6207 | 68.3258 | 2002 | 22 | 2002 | 28 | 5 | 17.8571 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8066 | 99.2505 | 98.3666 | 68.3281 | 3840 | 29 | 3794 | 63 | 61 | 96.8254 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6119 | 99.7409 | 99.4832 | 68.3306 | 3080 | 8 | 3080 | 16 | 13 | 81.2500 | |
| hfeng-pmm3 | INDEL | * | HG002complexvar | hetalt | 97.4347 | 95.2149 | 99.7604 | 68.3328 | 3522 | 177 | 3748 | 9 | 7 | 77.7778 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.3333 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.3498 | 96.7532 | 100.0000 | 68.3333 | 447 | 15 | 19 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | map_siren | het | 95.3627 | 96.2088 | 94.5314 | 68.3335 | 60017 | 2365 | 59499 | 3442 | 355 | 10.3138 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.1761 | 99.4340 | 93.1248 | 68.3364 | 6149 | 35 | 6163 | 455 | 33 | 7.2528 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4540 | 96.3472 | 98.5866 | 68.3439 | 15008 | 569 | 14997 | 215 | 126 | 58.6047 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.8291 | 16.6493 | 41.8960 | 68.3446 | 160 | 801 | 137 | 190 | 58 | 30.5263 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6535 | 62.0000 | 48.8636 | 68.3453 | 31 | 19 | 43 | 45 | 30 | 66.6667 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | homalt | 99.8420 | 99.7507 | 99.9334 | 68.3459 | 6002 | 15 | 6003 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0846 | 98.4716 | 99.7052 | 68.3462 | 1353 | 21 | 1353 | 4 | 2 | 50.0000 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | homalt | 98.7740 | 97.8248 | 99.7418 | 68.3464 | 6566 | 146 | 6566 | 17 | 12 | 70.5882 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.3456 | 85.6266 | 97.8831 | 68.3472 | 977 | 164 | 971 | 21 | 20 | 95.2381 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.3424 | 98.7673 | 95.9581 | 68.3562 | 641 | 8 | 641 | 27 | 27 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 82.4573 | 73.9961 | 93.1034 | 68.3567 | 2635 | 926 | 2673 | 198 | 164 | 82.8283 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 68.3599 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4929 | 96.4286 | 96.5574 | 68.3610 | 594 | 22 | 589 | 21 | 20 | 95.2381 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.3870 | 78.8652 | 48.9241 | 68.3622 | 1112 | 298 | 1205 | 1258 | 386 | 30.6836 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.5170 | 91.6918 | 91.3428 | 68.3622 | 607 | 55 | 1034 | 98 | 77 | 78.5714 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | * | 99.4963 | 99.4795 | 99.5130 | 68.3628 | 73579 | 385 | 73568 | 360 | 79 | 21.9444 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 89.0223 | 86.9300 | 91.2178 | 68.3628 | 41962 | 6309 | 53834 | 5183 | 1886 | 36.3882 | |
| dgrover-gatk | SNP | * | map_l100_m2_e1 | * | 99.4995 | 99.4835 | 99.5154 | 68.3658 | 74351 | 386 | 74340 | 362 | 79 | 21.8232 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 9.6515 | 5.2632 | 58.0645 | 68.3673 | 19 | 342 | 18 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | het | 34.5608 | 92.4769 | 21.2515 | 68.3690 | 1598 | 130 | 1569 | 5814 | 5564 | 95.7000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3464 | 99.9061 | 98.7929 | 68.3700 | 1064 | 1 | 1064 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.2248 | 49.9739 | 72.6787 | 68.3719 | 5739 | 5745 | 7342 | 2760 | 1993 | 72.2101 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.3721 | 68 | 0 | 68 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| ckim-gatk | SNP | * | map_l100_m2_e1 | homalt | 84.0675 | 72.5428 | 99.9455 | 68.3772 | 20164 | 7632 | 20164 | 11 | 7 | 63.6364 | |