PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37701-37750 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | * | 98.2632 | 97.2498 | 99.2980 | 66.9502 | 1273 | 36 | 1273 | 9 | 9 | 100.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.2183 | 97.1882 | 97.2484 | 66.9538 | 1348 | 39 | 1343 | 38 | 14 | 36.8421 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | * | 96.1801 | 94.5694 | 97.8466 | 66.9542 | 11685 | 671 | 13268 | 292 | 281 | 96.2329 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | het | 82.7586 | 73.4694 | 94.7368 | 66.9565 | 36 | 13 | 36 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 47.6401 | 79.3548 | 34.0369 | 66.9573 | 123 | 32 | 129 | 250 | 2 | 0.8000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.6909 | 99.6293 | 99.7526 | 66.9619 | 4838 | 18 | 4838 | 12 | 9 | 75.0000 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | * | 97.7073 | 97.6424 | 97.7722 | 66.9622 | 46801 | 1130 | 46783 | 1066 | 270 | 25.3283 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | * | 99.4052 | 99.4898 | 99.3207 | 66.9624 | 25154 | 129 | 25150 | 172 | 5 | 2.9070 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 72.0994 | 59.3220 | 91.8919 | 66.9643 | 35 | 24 | 34 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2639 | 98.7961 | 99.7361 | 66.9655 | 2626 | 32 | 2646 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |
| ckim-gatk | SNP | * | map_siren | * | 94.1020 | 89.7981 | 98.8391 | 66.9681 | 131310 | 14918 | 131287 | 1542 | 125 | 8.1064 | |
| ckim-isaac | SNP | ti | map_l100_m0_e0 | * | 75.5708 | 60.8148 | 99.7815 | 66.9687 | 13240 | 8531 | 13241 | 29 | 6 | 20.6897 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.8694 | 96.4285 | 97.3143 | 66.9705 | 63017 | 2334 | 62795 | 1733 | 1467 | 84.6509 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.8694 | 96.4285 | 97.3143 | 66.9705 | 63017 | 2334 | 62795 | 1733 | 1467 | 84.6509 | |
| jpowers-varprowl | SNP | tv | map_siren | het | 97.6371 | 97.8538 | 97.4214 | 66.9739 | 27995 | 614 | 27995 | 741 | 114 | 15.3846 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7476 | 95.6863 | 99.8995 | 66.9763 | 5967 | 269 | 5967 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5299 | 99.1222 | 99.9409 | 66.9776 | 16826 | 149 | 16910 | 10 | 6 | 60.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.5874 | 83.6820 | 94.1038 | 66.9782 | 400 | 78 | 399 | 25 | 22 | 88.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.6868 | 98.6611 | 72.6589 | 66.9839 | 17612 | 239 | 17869 | 6724 | 214 | 3.1826 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002complexvar | * | 97.6423 | 97.5046 | 97.7805 | 66.9855 | 1602 | 41 | 1586 | 36 | 28 | 77.7778 | |
| qzeng-custom | SNP | ti | map_l125_m2_e1 | homalt | 83.4603 | 71.9759 | 99.3054 | 66.9858 | 8247 | 3211 | 8149 | 57 | 56 | 98.2456 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.8319 | 77.0675 | 87.2242 | 66.9862 | 1519 | 452 | 1502 | 220 | 128 | 58.1818 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.8319 | 77.0675 | 87.2242 | 66.9862 | 1519 | 452 | 1502 | 220 | 128 | 58.1818 | |
| ckim-isaac | SNP | * | map_l150_m1_e0 | homalt | 63.2096 | 46.2255 | 99.9233 | 66.9874 | 5211 | 6062 | 5211 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | * | 99.3678 | 98.9068 | 99.8331 | 66.9886 | 21533 | 238 | 21534 | 36 | 20 | 55.5556 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0944 | 96.6971 | 99.5326 | 66.9886 | 15546 | 531 | 15546 | 73 | 43 | 58.9041 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0944 | 96.6971 | 99.5326 | 66.9886 | 15546 | 531 | 15546 | 73 | 43 | 58.9041 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.0553 | 90.6080 | 97.7752 | 66.9888 | 1669 | 173 | 1670 | 38 | 32 | 84.2105 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5596 | 98.2560 | 98.8651 | 66.9902 | 3831 | 68 | 3833 | 44 | 35 | 79.5455 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.6183 | 92.3077 | 55.8824 | 66.9903 | 12 | 1 | 19 | 15 | 14 | 93.3333 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.6168 | 96.8493 | 96.3855 | 66.9947 | 4703 | 153 | 4720 | 177 | 125 | 70.6215 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | homalt | 83.3237 | 71.7644 | 99.3217 | 66.9963 | 8151 | 3207 | 8054 | 55 | 54 | 98.1818 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.0924 | 99.2138 | 91.2996 | 66.9963 | 2524 | 20 | 2529 | 241 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.4079 | 99.8008 | 97.0534 | 66.9969 | 17533 | 35 | 17523 | 532 | 19 | 3.5714 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0879 | 96.4380 | 99.7952 | 66.9971 | 1462 | 54 | 1462 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.1912 | 96.4859 | 97.9070 | 66.9992 | 1263 | 46 | 1263 | 27 | 23 | 85.1852 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4121 | 96.3255 | 98.5235 | 67.0062 | 734 | 28 | 734 | 11 | 7 | 63.6364 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.2885 | 83.6842 | 79.0262 | 67.0065 | 1113 | 217 | 844 | 224 | 167 | 74.5536 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 59.8779 | 85.1773 | 46.1658 | 67.0074 | 1201 | 209 | 1192 | 1390 | 1248 | 89.7842 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 71.1731 | 58.4575 | 90.9582 | 67.0080 | 667 | 474 | 674 | 67 | 37 | 55.2239 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 46.1817 | 33.6158 | 73.7500 | 67.0103 | 119 | 235 | 118 | 42 | 40 | 95.2381 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3108 | 98.0414 | 98.5817 | 67.0115 | 17470 | 349 | 17099 | 246 | 203 | 82.5203 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 57.9068 | 46.9489 | 75.5372 | 67.0120 | 854 | 965 | 914 | 296 | 261 | 88.1757 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 57.9068 | 46.9489 | 75.5372 | 67.0120 | 854 | 965 | 914 | 296 | 261 | 88.1757 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| cchapple-custom | SNP | tv | map_l150_m1_e0 | homalt | 98.3252 | 96.7055 | 100.0000 | 67.0155 | 3816 | 130 | 3814 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | * | 98.6149 | 97.9374 | 99.3018 | 67.0164 | 1282 | 27 | 1280 | 9 | 8 | 88.8889 | |