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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36901-36950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4894 | 96.4286 | 98.5739 | 66.0205 | 1728 | 64 | 1728 | 25 | 17 | 68.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.8850 | 85.2657 | 97.2973 | 66.0239 | 353 | 61 | 360 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | * | 83.5998 | 73.9721 | 96.1087 | 66.0264 | 3922 | 1380 | 3927 | 159 | 104 | 65.4088 | |
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | * | 99.5344 | 99.4763 | 99.5926 | 66.0277 | 47680 | 251 | 47673 | 195 | 49 | 25.1282 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.0253 | 80.8399 | 83.2461 | 66.0293 | 616 | 146 | 636 | 128 | 70 | 54.6875 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1002 | 98.6070 | 99.5984 | 66.0300 | 991 | 14 | 992 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9820 | 98.8732 | 99.0909 | 66.0303 | 1053 | 12 | 1199 | 11 | 11 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | homalt | 99.8144 | 99.7918 | 99.8370 | 66.0308 | 11022 | 23 | 11022 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 93.6170 | 89.7959 | 66.0312 | 176 | 12 | 176 | 20 | 17 | 85.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | het | 98.4430 | 97.1937 | 99.7248 | 66.0349 | 19568 | 565 | 19569 | 54 | 9 | 16.6667 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6192 | 89.9522 | 97.5980 | 66.0369 | 752 | 84 | 772 | 19 | 15 | 78.9474 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4348 | 67.2727 | 100.0000 | 66.0377 | 37 | 18 | 36 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | homalt | 99.6092 | 99.3097 | 99.9104 | 66.0377 | 4460 | 31 | 4460 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 65.6064 | 54.0984 | 83.3333 | 66.0377 | 33 | 28 | 15 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.0377 | 13 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0155 | 98.2173 | 99.8268 | 66.0394 | 1157 | 21 | 1153 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.9241 | 70.7711 | 94.4782 | 66.0416 | 1707 | 705 | 1711 | 100 | 97 | 97.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.0047 | 86.8966 | 81.2992 | 66.0428 | 378 | 57 | 413 | 95 | 49 | 51.5789 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | * | 95.8155 | 94.7855 | 96.8682 | 66.0428 | 11597 | 638 | 11599 | 375 | 373 | 99.4667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0440 | 610 | 20 | 610 | 8 | 2 | 25.0000 | |
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | homalt | 99.8187 | 99.7103 | 99.9274 | 66.0474 | 11013 | 32 | 11013 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7315 | 99.5779 | 99.8856 | 66.0476 | 17458 | 74 | 17458 | 20 | 15 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 87.5304 | 79.5455 | 97.2973 | 66.0550 | 35 | 9 | 36 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 54.8241 | 40.1571 | 86.3699 | 66.0570 | 3731 | 5560 | 3783 | 597 | 508 | 85.0921 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 54.8241 | 40.1571 | 86.3699 | 66.0570 | 3731 | 5560 | 3783 | 597 | 508 | 85.0921 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2208 | 95.9411 | 98.5350 | 66.0589 | 1891 | 80 | 1816 | 27 | 9 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2208 | 95.9411 | 98.5350 | 66.0589 | 1891 | 80 | 1816 | 27 | 9 | 33.3333 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.1689 | 87.7049 | 73.8255 | 66.0592 | 107 | 15 | 110 | 39 | 39 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.1229 | 98.2424 | 90.3349 | 66.0632 | 3801 | 68 | 3776 | 404 | 398 | 98.5149 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.4228 | 99.0946 | 92.0135 | 66.0676 | 2189 | 20 | 2189 | 190 | 184 | 96.8421 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.1306 | 49.0909 | 57.8947 | 66.0714 | 27 | 28 | 11 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5310 | 97.2348 | 99.8622 | 66.0735 | 9424 | 268 | 9424 | 13 | 11 | 84.6154 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | * | 96.2734 | 94.1810 | 98.4609 | 66.0757 | 11637 | 719 | 11643 | 182 | 172 | 94.5055 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 4.1479 | 2.2831 | 22.6415 | 66.0800 | 20 | 856 | 48 | 164 | 113 | 68.9024 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4413 | 100.0000 | 98.8889 | 66.0804 | 267 | 0 | 267 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | * | 99.2885 | 99.2370 | 99.3401 | 66.0825 | 24842 | 191 | 24838 | 165 | 80 | 48.4848 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.6187 | 75.7143 | 75.5233 | 66.0841 | 477 | 153 | 469 | 152 | 89 | 58.5526 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 66.0870 | 39 | 3 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 66.0870 | 39 | 3 | 39 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1850 | 99.4746 | 96.9283 | 66.0880 | 568 | 3 | 568 | 18 | 18 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.7368 | 97.8723 | 88.1133 | 66.0895 | 2162 | 47 | 2209 | 298 | 219 | 73.4899 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.4316 | 96.3170 | 98.5722 | 66.0922 | 1726 | 66 | 1726 | 25 | 17 | 68.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 81.7913 | 85.3474 | 78.5196 | 66.0925 | 565 | 97 | 541 | 148 | 141 | 95.2703 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.8349 | 99.1243 | 94.6488 | 66.0998 | 566 | 5 | 566 | 32 | 32 | 100.0000 | |