PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36151-36200 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | homalt | 97.9071 | 96.0998 | 99.7837 | 64.7675 | 3696 | 150 | 3690 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 64.7727 | 0 | 0 | 0 | 31 | 1 | 3.2258 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 64.7727 | 0 | 0 | 0 | 31 | 1 | 3.2258 | ||
| ckim-vqsr | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 64.7727 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6515 | 97.6942 | 99.6278 | 64.7727 | 805 | 19 | 803 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7723 | 97.8448 | 99.7176 | 64.7729 | 3178 | 70 | 3178 | 9 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4245 | 98.9414 | 99.9124 | 64.7733 | 27385 | 293 | 27376 | 24 | 14 | 58.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 64.7757 | 269 | 1 | 267 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7887 | 96.0736 | 99.5661 | 64.7766 | 8931 | 365 | 8950 | 39 | 38 | 97.4359 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 24.6578 | 16.3033 | 50.5747 | 64.7773 | 486 | 2495 | 484 | 473 | 460 | 97.2516 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e1 | * | 99.1279 | 98.4852 | 99.7790 | 64.7783 | 46487 | 715 | 46495 | 103 | 28 | 27.1845 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 92.1781 | 91.6618 | 92.7003 | 64.7784 | 1561 | 142 | 1562 | 123 | 54 | 43.9024 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7288 | 90.2597 | 95.3368 | 64.7810 | 556 | 60 | 552 | 27 | 25 | 92.5926 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1703 | 98.2906 | 98.0503 | 64.7824 | 4370 | 76 | 4325 | 86 | 81 | 94.1860 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.3653 | 22.6531 | 71.1538 | 64.7856 | 111 | 379 | 111 | 45 | 35 | 77.7778 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.2713 | 98.9588 | 91.8487 | 64.7877 | 2186 | 23 | 2186 | 194 | 191 | 98.4536 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | * | 91.0728 | 88.7045 | 93.5709 | 64.7882 | 10853 | 1382 | 11658 | 801 | 716 | 89.3883 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | homalt | 87.5215 | 78.2371 | 99.3060 | 64.7976 | 3009 | 837 | 3005 | 21 | 17 | 80.9524 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | het | 99.4037 | 99.0762 | 99.7333 | 64.8020 | 30674 | 286 | 30667 | 82 | 20 | 24.3902 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | het | 99.3987 | 99.0660 | 99.7336 | 64.8032 | 30336 | 286 | 30329 | 81 | 20 | 24.6914 | |
| jlack-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9723 | 97.9176 | 88.5025 | 64.8041 | 2163 | 46 | 2163 | 281 | 274 | 97.5089 | |
| hfeng-pmm3 | SNP | * | map_l100_m1_e0 | het | 99.5486 | 99.4400 | 99.6575 | 64.8095 | 45105 | 254 | 45094 | 155 | 14 | 9.0323 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.6660 | 86.7925 | 73.6211 | 64.8101 | 644 | 98 | 614 | 220 | 220 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.7343 | 95.5895 | 99.9775 | 64.8179 | 8886 | 410 | 8904 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | het | 32.8633 | 69.2308 | 21.5453 | 64.8197 | 144 | 64 | 145 | 528 | 493 | 93.3712 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | het | 99.1180 | 99.1503 | 99.0858 | 64.8238 | 15286 | 131 | 15282 | 141 | 59 | 41.8440 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.8931 | 74.1034 | 96.6631 | 64.8282 | 16488 | 5762 | 16483 | 569 | 336 | 59.0510 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8917 | 98.2074 | 97.5780 | 64.8285 | 17531 | 320 | 17606 | 437 | 24 | 5.4920 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 60.2273 | 86.8852 | 46.0870 | 64.8318 | 53 | 8 | 53 | 62 | 60 | 96.7742 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.7996 | 97.7237 | 97.8756 | 64.8324 | 1889 | 44 | 1889 | 41 | 41 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 89.2536 | 84.1610 | 95.0022 | 64.8333 | 2237 | 421 | 2205 | 116 | 101 | 87.0690 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.3949 | 98.7970 | 100.0000 | 64.8333 | 657 | 8 | 633 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 64.8352 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8481 | 99.8589 | 64.8359 | 9200 | 14 | 9200 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.8676 | 81.3559 | 90.9091 | 64.8402 | 144 | 33 | 140 | 14 | 3 | 21.4286 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | het | 97.1579 | 95.0588 | 99.3518 | 64.8409 | 808 | 42 | 13029 | 85 | 74 | 87.0588 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 64.8415 | 487 | 0 | 487 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8495 | 99.8602 | 64.8422 | 9288 | 14 | 9288 | 13 | 5 | 38.4615 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.5790 | 73.7247 | 96.4741 | 64.8422 | 23586 | 8406 | 23586 | 862 | 511 | 59.2807 | |
| jli-custom | SNP | * | map_l100_m2_e0 | het | 99.2823 | 99.1336 | 99.4314 | 64.8428 | 45997 | 402 | 45994 | 263 | 62 | 23.5741 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | * | 98.6727 | 97.5517 | 99.8198 | 64.8483 | 11077 | 278 | 11076 | 20 | 2 | 10.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.5999 | 98.1413 | 84.1348 | 64.8517 | 2904 | 55 | 2922 | 551 | 27 | 4.9002 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.3028 | 95.2767 | 97.3513 | 64.8567 | 4236 | 210 | 4190 | 114 | 109 | 95.6140 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | homalt | 99.7415 | 99.5473 | 99.9364 | 64.8588 | 10995 | 50 | 10995 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8358 | 99.8591 | 99.8124 | 64.8592 | 27639 | 39 | 27673 | 52 | 16 | 30.7692 | |