PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36101-36150 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 96.6068 | 98.2694 | 64.7012 | 3929 | 138 | 3918 | 69 | 61 | 88.4058 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | * | 99.1232 | 98.4718 | 99.7831 | 64.7024 | 46009 | 714 | 46011 | 100 | 28 | 28.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.7059 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7687 | 94.9675 | 98.6395 | 64.7059 | 585 | 31 | 580 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 64.7059 | 0 | 0 | 0 | 6 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.2616 | 10.7547 | 92.1569 | 64.7059 | 57 | 473 | 94 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 64.7059 | 10 | 12 | 30 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.1905 | 61.5385 | 100.0000 | 64.7059 | 24 | 15 | 24 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 78.4352 | 68.5826 | 91.5936 | 64.7059 | 1229 | 563 | 1253 | 115 | 90 | 78.2609 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 74.1073 | 99.0588 | 59.1965 | 64.7074 | 3894 | 37 | 3949 | 2722 | 32 | 1.1756 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1022 | 99.6257 | 98.5842 | 64.7104 | 18098 | 68 | 18104 | 260 | 243 | 93.4615 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4934 | 99.9080 | 99.0821 | 64.7126 | 2172 | 2 | 2159 | 20 | 1 | 5.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9574 | 97.3744 | 96.5440 | 64.7133 | 2151 | 58 | 2151 | 77 | 74 | 96.1039 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | * | 94.0016 | 91.1217 | 97.0695 | 64.7141 | 11259 | 1097 | 11262 | 340 | 339 | 99.7059 | |
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | * | 93.7462 | 92.1291 | 95.4211 | 64.7145 | 11272 | 963 | 11274 | 541 | 497 | 91.8669 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | * | 96.6675 | 94.0758 | 99.4060 | 64.7187 | 11624 | 732 | 11547 | 69 | 52 | 75.3623 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3663 | 99.7116 | 97.0568 | 64.7187 | 1383 | 4 | 1418 | 43 | 1 | 2.3256 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | * | 99.4660 | 99.2933 | 99.6392 | 64.7198 | 48615 | 346 | 48608 | 176 | 120 | 68.1818 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | * | 99.5430 | 99.2483 | 99.8395 | 64.7214 | 73408 | 556 | 73409 | 118 | 50 | 42.3729 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | * | 99.4666 | 99.2947 | 99.6390 | 64.7230 | 49136 | 349 | 49129 | 178 | 121 | 67.9775 | |
| gduggal-snapplat | INDEL | D6_15 | * | * | 49.9163 | 35.9727 | 81.5114 | 64.7243 | 9386 | 16706 | 8068 | 1830 | 539 | 29.4536 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | het | 99.0340 | 98.4126 | 99.6632 | 64.7264 | 15685 | 253 | 15685 | 53 | 17 | 32.0755 | |
| egarrison-hhga | SNP | * | map_l100_m2_e1 | * | 99.5464 | 99.2547 | 99.8398 | 64.7282 | 74180 | 557 | 74181 | 119 | 50 | 42.0168 | |
| ckim-gatk | SNP | ti | map_siren | * | 94.6168 | 90.5675 | 99.0452 | 64.7326 | 90889 | 9466 | 90874 | 876 | 96 | 10.9589 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | homalt | 74.1154 | 66.3230 | 83.9827 | 64.7328 | 193 | 98 | 194 | 37 | 34 | 91.8919 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1316 | 82.0359 | 100.0000 | 64.7355 | 137 | 30 | 140 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 87.2686 | 88.7234 | 85.8607 | 64.7399 | 417 | 53 | 419 | 69 | 36 | 52.1739 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7263 | 88.4232 | 97.4697 | 64.7401 | 886 | 116 | 886 | 23 | 20 | 86.9565 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.5746 | 78.1250 | 66.0377 | 64.7450 | 225 | 63 | 210 | 108 | 106 | 98.1481 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8737 | 96.6718 | 99.1058 | 64.7457 | 63176 | 2175 | 62956 | 568 | 465 | 81.8662 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1965 | 97.0144 | 99.4078 | 64.7466 | 15597 | 480 | 15611 | 93 | 72 | 77.4194 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | * | 99.3403 | 99.3525 | 99.3281 | 64.7470 | 48644 | 317 | 48637 | 329 | 19 | 5.7751 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.5852 | 99.2612 | 97.9184 | 64.7490 | 55220 | 411 | 55320 | 1176 | 260 | 22.1088 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | homalt | 97.7145 | 95.5453 | 99.9844 | 64.7518 | 6413 | 299 | 6411 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | homalt | 99.8317 | 99.8046 | 99.8588 | 64.7570 | 9196 | 18 | 9196 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | homalt | 99.8333 | 99.8065 | 99.8602 | 64.7574 | 9284 | 18 | 9284 | 13 | 5 | 38.4615 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6961 | 99.6184 | 97.7906 | 64.7616 | 3916 | 15 | 3895 | 88 | 3 | 3.4091 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.6443 | 96.0000 | 97.2973 | 64.7619 | 72 | 3 | 72 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7829 | 92.3684 | 99.4595 | 64.7619 | 351 | 29 | 368 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5765 | 99.8591 | 99.2956 | 64.7620 | 27639 | 39 | 27629 | 196 | 19 | 9.6939 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.8519 | 95.9843 | 97.7354 | 64.7626 | 3418 | 143 | 3539 | 82 | 70 | 85.3659 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | * | 99.3433 | 99.3594 | 99.3272 | 64.7652 | 49168 | 317 | 49161 | 333 | 19 | 5.7057 | |