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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 675 676 677 678 679 680 681 682 683 ... 1720 1721 » 33901-33950 / 86044 show all
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.1915	97.4975	98.8955	61.4377	30622	786	30622	342	309	90.3509
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1915	97.4975	98.8955	61.4377	30622	786	30622	342	309	90.3509
jli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	61.4379	59	0	59	0	0
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	61.4379	59	0	59	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	61.4379	59	0	59	0	0
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	61.4458	32	7	32	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	28.1250	61.4458	0	497	27	69	24	34.7826
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.3141	90.0214	96.8569	61.4458	5476	607	5362	174	160	91.9540
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	93.7973	90.9091	96.8750	61.4458	30	3	31	1	1	100.0000
ciseli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	84.6682	96.2747	75.5590	61.4479	17186	665	17402	5629	124	2.2029
anovak-vg	SNP	*	map_l100_m2_e0	homalt	91.7943	85.3141	99.3397	61.4498	23481	4042	23170	154	133	86.3636
gduggal-bwaplat	INDEL	*	HG002complexvar	het	89.8971	82.6214	98.5779	61.4508	38181	8031	38126	550	282	51.2727
ghariani-varprowl	SNP	*	HG002compoundhet	het	84.6682	93.2007	77.5669	61.4559	13214	964	13447	3889	29	0.7457
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	87.7042	78.9949	98.5719	61.4567	2971	790	2968	43	28	65.1163
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	87.7042	78.9949	98.5719	61.4567	2971	790	2968	43	28	65.1163
hfeng-pmm3	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.1256	89.5940	96.9471	61.4582	5450	633	5335	168	156	92.8571
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.2973	97.2973	97.2973	61.4583	36	1	36	1	1	100.0000
ckim-isaac	SNP	*	map_l125_m1_e0	homalt	66.8137	50.1804	99.9411	61.4585	8483	8422	8483	5	5	100.0000
gduggal-bwavard	SNP	tv	map_l100_m1_e0	homalt	98.7927	97.7441	99.8639	61.4588	8839	204	8807	12	10	83.3333
cchapple-custom	SNP	ti	map_siren	het	98.0329	98.5813	97.4906	61.4640	61497	885	61538	1584	362	22.8535
astatham-gatk	SNP	ti	map_siren	het	90.2825	82.3747	99.8698	61.4644	51387	10995	51378	67	30	44.7761
cchapple-custom	SNP	*	map_l125_m1_e0	homalt	98.3281	96.7169	99.9939	61.4654	16350	555	16345	1	1	100.0000
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.4958	98.9669	98.0290	61.4708	958	10	945	19	19	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.0184	92.3880	99.9457	61.4714	5486	452	5522	3	3	100.0000
ltrigg-rtg2	SNP	ti	map_l125_m2_e0	*	99.0101	98.1724	99.8622	61.4718	29705	553	29707	41	10	24.3902
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.2392	98.5000	97.9798	61.4786	197	3	194	4	4	100.0000
eyeh-varpipe	INDEL	I1_5	HG002compoundhet	hetalt	60.8513	43.9832	98.7067	61.4827	4916	6261	5190	68	65	95.5882
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6504	99.6818	99.6191	61.4842	55454	177	55443	212	23	10.8491
ciseli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.5412	99.3311	95.8146	61.4853	3861	26	3846	168	74	44.0476
bgallagher-sentieon	SNP	tv	map_l100_m0_e0	homalt	99.6221	99.4020	99.8433	61.4866	3823	23	3823	6	4	66.6667
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	89.6250	81.2640	99.9038	61.4872	17796	4103	17660	17	16	94.1176
ciseli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	53.7560	79.3033	40.6582	61.4881	387	101	383	559	525	93.9177
raldana-dualsentieon	INDEL	D1_5	*	homalt	99.7919	99.9448	99.6394	61.4897	48899	27	48904	177	175	98.8701
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7843	99.6517	99.9173	61.4911	10873	38	10869	9	5	55.5556
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9158	99.8613	99.9703	61.4918	10083	14	10085	3	3	100.0000
ckim-gatk	INDEL	D1_5	*	*	99.4755	99.4262	99.5247	61.4945	145903	842	145958	697	326	46.7719
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.8021	99.7736	95.9069	61.4948	11458	26	11458	489	478	97.7505
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	72.6669	63.6190	84.7150	61.4963	668	382	654	118	77	65.2542
ltrigg-rtg2	SNP	*	map_l150_m2_e0	het	98.1544	96.5480	99.8151	61.4966	19438	695	19439	36	2	5.5556
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.3335	96.2182	96.4490	61.4990	1552	61	1521	56	30	53.5714
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.6207	99.7211	97.5443	61.5021	715	2	715	18	17	94.4444
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7238	99.6461	99.8015	61.5050	28160	100	28162	56	44	78.5714
ckim-dragen	SNP	tv	map_siren	*	98.9465	99.4753	98.4233	61.5086	45689	241	45694	732	69	9.4262
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	93.1275	89.5499	97.0028	61.5094	5133	599	3463	107	92	85.9813
ckim-isaac	SNP	*	map_l125_m0_e0	homalt	64.1166	47.1990	99.9369	61.5104	3168	3544	3168	2	2	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.3847	97.8381	98.9375	61.5106	30729	679	30729	330	295	89.3939
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.3847	97.8381	98.9375	61.5106	30729	679	30729	330	295	89.3939
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.5548	94.1128	99.1270	61.5152	2270	142	2271	20	15	75.0000
qzeng-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0978	99.2811	98.9152	61.5160	27758	201	27902	306	67	21.8954
ltrigg-rtg1	SNP	tv	map_l125_m2_e1	het	98.7185	97.8205	99.6332	61.5213	10323	230	10322	38	5	13.1579

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