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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 654 655 656 657 658 659 660 661 662 ... 1720 1721 » 32851-32900 / 86044 show all
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.5124	96.0784	98.9899	59.9190	98	4	98	1	1	100.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.9070	97.9644	99.8679	59.9259	770	16	756	1	0	0.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	68.0723	52.0737	98.2609	59.9303	113	104	113	2	2	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.9327	120	2	119	0	0
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1956	90.5120	98.1916	59.9330	3606	378	3638	67	32	47.7612
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	19.2653	18.2294	20.4260	59.9344	383	1718	374	1457	1446	99.2450
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3204	98.9679	99.6754	59.9358	19657	205	19650	64	45	70.3125
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	81.7047	98.6709	69.7171	59.9362	1559	21	1577	685	12	1.7518
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4504	99.3304	99.5707	59.9377	19729	133	19713	85	64	75.2941
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	85.3906	75.6471	98.0153	59.9388	643	207	642	13	11	84.6154
asubramanian-gatk	INDEL	D1_5	*	het	99.3754	99.1025	99.6499	59.9427	86788	786	86804	305	126	41.3115
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	51.4833	49.7958	53.2893	59.9443	21579	21756	21523	18866	18163	96.2737
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8118	99.6334	99.9908	59.9447	10871	40	10868	1	0	0.0000
hfeng-pmm3	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1881	98.4782	99.9083	59.9451	34880	539	34871	32	8	25.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7811	99.6656	99.8969	59.9463	3874	13	3874	4	4	100.0000
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	46.0787	30.3663	95.4861	59.9469	4261	9771	6050	286	274	95.8042
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8868	97.0512	98.7368	59.9494	1876	57	1876	24	23	95.8333
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.6701	99.9632	59.9499	10875	36	10872	4	3	75.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.1994	99.9203	96.5367	59.9507	3763	3	3763	135	133	98.5185
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.1994	99.9203	96.5367	59.9507	3763	3	3763	135	133	98.5185
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.5003	97.0335	90.2153	59.9508	8112	248	8086	877	859	97.9475
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.5003	97.0335	90.2153	59.9508	8112	248	8086	877	859	97.9475
asubramanian-gatk	INDEL	D6_15	HG002complexvar	het	98.2617	97.2756	99.2679	59.9547	3035	85	2983	22	18	81.8182
anovak-vg	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	37.1500	27.9605	55.3371	59.9550	595	1533	591	477	362	75.8910
gduggal-bwavard	SNP	ti	map_l100_m1_e0	homalt	98.5262	97.1882	99.9016	59.9578	17455	505	17256	17	13	76.4706
ltrigg-rtg1	SNP	tv	map_l125_m0_e0	het	97.8147	96.1145	99.5761	59.9585	4230	171	4228	18	3	16.6667
jlack-gatk	INDEL	D1_5	*	het	99.1283	99.6506	98.6115	59.9642	87268	306	87281	1229	246	20.0163
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7941	99.9742	99.6146	59.9671	3877	1	3877	15	0	0.0000
asubramanian-gatk	INDEL	I6_15	*	het	98.1049	97.0796	99.1521	59.9730	9740	293	9706	83	53	63.8554
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7425	99.6656	99.8196	59.9732	3874	13	3874	7	6	85.7143
ckim-isaac	SNP	ti	map_l125_m0_e0	homalt	65.7804	49.0314	99.9093	59.9855	2202	2289	2202	2	2	100.0000
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	46.8164	79.8780	33.1115	59.9867	393	99	398	804	747	92.9104
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	77.8141	67.6306	91.6078	59.9900	1333	638	2205	202	194	96.0396
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	77.8141	67.6306	91.6078	59.9900	1333	638	2205	202	194	96.0396
ghariani-varprowl	INDEL	I6_15	HG002complexvar	het	82.0261	92.4841	73.6930	59.9920	2178	177	2213	790	772	97.7215
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.1875	96.2685	98.1242	59.9927	30236	1172	30236	578	510	88.2353
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.1875	96.2685	98.1242	59.9927	30236	1172	30236	578	510	88.2353
jlack-gatk	SNP	ti	map_l100_m0_e0	homalt	98.9685	98.1219	99.8299	59.9927	7628	146	7628	13	11	84.6154
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	80.3927	81.2870	79.5178	59.9939	9335	2149	9333	2404	2119	88.1448
egarrison-hhga	INDEL	D16_PLUS	*	homalt	94.6666	94.3853	94.9495	59.9952	1597	95	1598	85	63	74.1176
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.8403	97.7490	99.9563	59.9965	6861	158	6856	3	0	0.0000
mlin-fermikit	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	40.0000	25.0000	100.0000	60.0000	3	9	4	0	0
mlin-fermikit	INDEL	I6_15	tech_badpromoters	hetalt	80.0000	66.6667	100.0000	60.0000	2	1	2	0	0
ndellapenna-hhga	INDEL	*	func_cds	hetalt	88.8889	80.0000	100.0000	60.0000	4	1	4	0	0
ndellapenna-hhga	SNP	*	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	10	0	10	0	0
ndellapenna-hhga	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	10	0	10	0	0
qzeng-custom	INDEL	C16_PLUS	func_cds	*		0.0000	0.0000	60.0000	0	0	0	4	0	0.0000
qzeng-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	het		0.0000	0.0000	60.0000	0	0	0	10	0	0.0000
ltrigg-rtg2	SNP	tv	tech_badpromoters	*	98.6301	100.0000	97.2973	60.0000	72	0	72	2	0	0.0000

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