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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 653 654 655 656 657 658 659 660 661 ... 1720 1721 » 32801-32850 / 86044 show all
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	9.4937	5.5556	32.6087	59.8253	23	391	30	62	18	29.0323
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.2288	98.9002	86.4006	59.8278	1169	13	1169	184	183	99.4565
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	homalt	99.8051	99.6810	99.9295	59.8306	18435	59	18434	13	13	100.0000
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.5525	99.0160	98.0933	59.8338	2415	24	2418	47	12	25.5319
ndellapenna-hhga	SNP	*	map_l100_m1_e0	homalt	99.7849	99.6482	99.9220	59.8338	26908	95	26908	21	19	90.4762
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1711	98.8017	99.5433	59.8357	19624	238	19617	90	58	64.4444
jmaeng-gatk	INDEL	I6_15	HG002complexvar	het	99.1867	98.5563	99.8253	59.8421	2321	34	2285	4	4	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	59.8425	50	2	51	0	0
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	59.8425	50	2	51	0	0
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	0.0000	0.0000	16.9811	59.8485	0	87	9	44	12	27.2727
mlin-fermikit	SNP	*	map_l150_m0_e0	homalt	52.6207	43.4581	66.6792	59.8524	1777	2312	1777	888	815	91.7793
ckim-dragen	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	98.8223	98.1693	99.4839	59.8527	1716	32	1735	9	2	22.2222
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	85.7762	80.3859	91.9414	59.8529	250	61	251	22	20	90.9091
mlin-fermikit	SNP	ti	map_l125_m1_e0	het	61.0167	44.2242	98.3680	59.8543	8078	10188	8077	134	7	5.2239
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	53.3229	48.2739	59.5513	59.8591	7761	8316	10724	7284	5656	77.6496
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	53.3229	48.2739	59.5513	59.8591	7761	8316	10724	7284	5656	77.6496
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.8699	99.5676	98.1818	59.8602	2533	11	2538	47	2	4.2553
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	0.0000	0.0000	27.3743	59.8655	0	168	49	130	40	30.7692
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	98.9443	98.1905	99.7099	59.8758	1031	19	1031	3	3	100.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	86.5263	95.4338	79.1396	59.8767	836	40	2318	611	258	42.2259
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8202	97.9852	99.6695	59.8782	17800	366	17792	59	52	88.1356
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8202	97.9852	99.6695	59.8782	17800	366	17792	59	52	88.1356
dgrover-gatk	SNP	ti	map_l100_m2_e1	homalt	99.7264	99.5242	99.9294	59.8793	18406	88	18406	13	11	84.6154
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.9161	92.6686	99.3994	59.8795	316	25	331	2	2	100.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.2210	89.9329	98.9384	59.8807	134	15	466	5	5	100.0000
raldana-dualsentieon	INDEL	D1_5	HG002complexvar	homalt	99.8492	99.9151	99.7834	59.8813	10589	9	10594	23	21	91.3043
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.7593	99.5000	98.0296	59.8814	199	1	199	4	4	100.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	98.7142	99.2593	98.1752	59.8829	268	2	269	5	4	80.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3059	99.0585	99.5546	59.8847	19675	187	19668	88	46	52.2727
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	82.3899	73.5955	93.5714	59.8854	131	47	131	9	3	33.3333
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3263	98.9377	99.7181	59.8869	10990	118	10964	31	12	38.7097
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.9936	86.9048	100.0000	59.8901	73	11	73	0	0
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.3319	98.5866	94.1781	59.8901	279	4	275	17	17	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.6040	99.7536	95.5451	59.8944	5667	14	5662	264	263	99.6212
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	13.0521	7.5688	47.3684	59.8945	33	403	72	80	25	31.2500
jpowers-varprowl	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	44.0104	40.4063	48.3203	59.8954	6484	9563	6487	6938	6879	99.1496
gduggal-bwaplat	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	81.1243	68.8494	98.7257	59.8978	1472	666	1472	19	4	21.0526
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.7055	91.7647	100.0000	59.8985	78	7	79	0	0
dgrover-gatk	SNP	ti	map_l100_m2_e0	homalt	99.7264	99.5248	99.9287	59.9046	18222	87	18222	13	11	84.6154
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	41.4578	77.0718	28.3552	59.9110	279	83	281	710	706	99.4366
hfeng-pmm2	INDEL	I1_5	*	het	99.6023	99.4952	99.7096	59.9116	78642	399	78624	229	130	56.7686
astatham-gatk	INDEL	*	*	*	99.3424	99.2404	99.4446	59.9126	341925	2617	341788	1909	1550	81.1943
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.9128	6986	33	6983	1	0	0.0000
raldana-dualsentieon	SNP	tv	map_l100_m0_e0	homalt	99.7265	99.5580	99.8956	59.9142	3829	17	3829	4	2	50.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.6737	94.1848	99.2978	59.9146	7920	489	7919	56	51	91.0714
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.6259	94.6129	98.7264	59.9168	2090	119	2093	27	24	88.8889
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.0940	96.7742	97.4160	59.9171	510	17	1508	40	36	90.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	homalt	99.5677	99.2411	99.8964	59.9180	7715	59	7715	8	6	75.0000

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