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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 652 653 654 655 656 657 658 659 660 ... 1720 1721 » 32751-32800 / 86044 show all
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	44.4394	41.1352	48.3208	59.7393	7269	10402	7223	7725	7546	97.6828
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	44.4394	41.1352	48.3208	59.7393	7269	10402	7223	7725	7546	97.6828
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	92.1122	87.8788	96.7742	59.7403	29	4	30	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	92.1122	87.8788	96.7742	59.7403	29	4	30	1	1	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2393	99.5160	98.9641	59.7528	2673	13	2675	28	4	14.2857
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.7409	96.6568	98.8496	59.7558	29461	1019	60407	703	560	79.6586
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.7409	96.6568	98.8496	59.7558	29461	1019	60407	703	560	79.6586
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6667	84.6154	100.0000	59.7561	33	6	33	0	0
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	80.3666	72.7564	89.7547	59.7561	2270	850	622	71	71	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	95.1379	92.3154	98.1386	59.7586	925	77	949	18	6	33.3333
raldana-dualsentieon	SNP	tv	map_siren	het	99.3697	99.4827	99.2570	59.7589	28461	148	28456	213	2	0.9390
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	3.8186	2.0873	22.3881	59.7598	11	516	30	104	70	67.3077
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	32.6491	36.5854	29.4776	59.7598	75	130	79	189	100	52.9101
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	32.6491	36.5854	29.4776	59.7598	75	130	79	189	100	52.9101
dgrover-gatk	SNP	*	map_siren	het	99.5699	99.6197	99.5201	59.7603	90645	346	90631	437	77	17.6201
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8394	99.6976	99.9816	59.7625	10878	33	10875	2	1	50.0000
ltrigg-rtg2	SNP	*	map_l150_m0_e0	het	96.8156	94.0050	99.7994	59.7632	7464	476	7461	15	0	0.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	81.6869	98.0583	70.0000	59.7641	808	16	812	348	6	1.7241
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.3348	92.1922	81.1772	59.7644	5160	437	5158	1196	1175	98.2441
rpoplin-dv42	INDEL	I16_PLUS	*	*	94.2741	91.2655	97.4879	59.7696	5820	557	5821	150	140	93.3333
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	88.8955	90.5000	87.3469	59.7701	181	19	214	31	31	100.0000
dgrover-gatk	SNP	tv	map_siren	*	99.6255	99.6408	99.6103	59.7727	45765	165	45757	179	35	19.5531
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.3077	85.7143	100.0000	59.7765	72	12	72	0	0
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.3077	85.7143	100.0000	59.7765	72	12	72	0	0
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5423	99.8852	59.7783	1740	8	1740	2	1	50.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	78.1600	65.8800	96.0669	59.7785	3908	2024	3908	160	48	30.0000
eyeh-varpipe	INDEL	I6_15	HG002complexvar	hetalt	50.4268	34.5053	93.6293	59.7826	422	801	485	33	33	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.6709	88.0952	100.0000	59.7826	74	10	74	0	0
jli-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7434	99.9174	59.7828	10883	28	10881	9	5	55.5556
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7333	100.0000	99.4681	59.7861	374	0	374	2	1	50.0000
ghariani-varprowl	INDEL	*	HG002complexvar	het	93.2466	97.4941	89.3538	59.7893	45053	1158	45020	5364	4472	83.3706
ltrigg-rtg1	SNP	tv	map_l100_m2_e1	*	99.2889	98.8609	99.7207	59.7908	24995	288	24990	70	9	12.8571
jli-custom	SNP	tv	map_l100_m0_e0	homalt	99.6481	99.4020	99.8955	59.7962	3823	23	3823	4	4	100.0000
jpowers-varprowl	INDEL	*	HG002compoundhet	het	23.2624	81.2408	13.5747	59.7974	3326	768	3502	22296	22169	99.4304
eyeh-varpipe	INDEL	D16_PLUS	HG002compoundhet	het	53.8274	51.6049	56.2500	59.7990	209	196	45	35	35	100.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	59.8035	3887	0	3887	0	0
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	93.4330	91.3758	95.5850	59.8048	445	42	433	20	5	25.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	94.7146	92.7089	96.8091	59.8061	29118	2290	29975	988	774	78.3401
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.7146	92.7089	96.8091	59.8061	29118	2290	29975	988	774	78.3401
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	homalt	99.7656	99.6100	99.9217	59.8070	3831	15	3829	3	1	33.3333
egarrison-hhga	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	81.4567	75.6715	88.1998	59.8076	12143	3904	12273	1642	1435	87.3934
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	94.8694	94.5122	95.2294	59.8083	155	9	519	26	23	88.4615
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	94.9467	93.2432	96.7136	59.8113	207	15	206	7	5	71.4286
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.8113	6986	33	6983	1	0	0.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	94.0000	88.6792	100.0000	59.8131	47	6	43	0	0
asubramanian-gatk	INDEL	D1_5	func_cds	het	100.0000	100.0000	100.0000	59.8131	85	0	86	0	0
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.6965	98.0478	99.3539	59.8156	10698	213	10610	69	47	68.1159
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	96.2459	94.4805	98.0785	59.8187	1164	68	1174	23	10	43.4783

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