PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 650 651 652 653 654 655 656 657 658 ... 1720 1721 » 32651-32700 / 86044 show all
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.9656	92.6471	87.4350	59.5797	1008	80	1009	145	82	56.5517
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7163	99.4597	99.9741	59.5798	3866	21	3866	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4000	99.1045	99.6973	59.5840	996	9	988	3	1	33.3333
ndellapenna-hhga	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	94.3311	97.1963	91.6300	59.5874	3536	102	3536	323	127	39.3189
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.3252	96.0422	83.4862	59.5922	364	15	364	72	72	100.0000
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.8701	98.1095	99.6426	59.5927	10898	210	10873	39	20	51.2821
jlack-gatk	INDEL	I6_15	HG002complexvar	het	98.9714	98.3439	99.6068	59.5940	2316	39	2280	9	8	88.8889
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	44.6151	28.9256	97.5000	59.5960	105	258	117	3	3	100.0000
asubramanian-gatk	INDEL	D1_5	HG002compoundhet	hetalt	96.4959	93.9311	99.2046	59.5968	9596	620	9604	77	71	92.2078
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	89.1839	87.6797	90.7407	59.6010	427	60	441	45	26	57.7778
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8633	99.8472	99.8795	59.6020	55546	85	55530	67	38	56.7164
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	95.2210	94.2188	96.2448	59.6025	2575	158	2563	100	97	97.0000
bgallagher-sentieon	INDEL	*	*	*	99.2678	99.2143	99.3213	59.6036	341835	2707	341703	2335	1924	82.3983
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	93.0896	87.2376	99.7831	59.6058	12885	1885	12884	28	19	67.8571
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	86.2517	96.2231	78.1528	59.6097	17146	673	18083	5055	4861	96.1622
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	41.8443	31.2155	63.4483	59.6100	113	249	92	53	49	92.4528
ckim-isaac	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	71.9593	58.1340	94.4123	59.6109	486	350	490	29	18	62.0690
gduggal-bwaplat	INDEL	D1_5	HG002complexvar	homalt	93.6134	89.6018	98.0010	59.6110	9496	1102	9462	193	170	88.0829
ghariani-varprowl	SNP	ti	map_siren	*	99.0024	99.3374	98.6698	59.6146	99690	665	99693	1344	247	18.3780
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	79.3774	73.9130	85.7143	59.6154	34	12	36	6	5	83.3333
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	84.9868	78.6885	92.3810	59.6154	96	26	97	8	3	37.5000
gduggal-snapvard	INDEL	*	HG002compoundhet	homalt	74.7625	67.9300	83.1230	59.6178	466	220	527	107	96	89.7196
jli-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1334	94.7850	99.6011	59.6178	14613	804	14733	59	58	98.3051
ciseli-custom	INDEL	D16_PLUS	*	homalt	66.9047	89.8936	53.2793	59.6184	1521	171	1511	1325	1241	93.6604
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.5376	99.8908	99.1870	59.6192	1829	2	1830	15	1	6.6667
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	88.3886	90.9836	85.9375	59.6215	111	11	110	18	18	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.8396	97.2973	83.4437	59.6257	252	7	252	50	48	96.0000
hfeng-pmm1	INDEL	I1_5	*	het	99.6416	99.5559	99.7275	59.6258	78690	351	78673	215	113	52.5581
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7836	92.3684	99.4609	59.6300	351	29	369	2	2	100.0000
astatham-gatk	INDEL	I6_15	HG002complexvar	het	99.2512	98.7261	99.7819	59.6303	2325	30	2288	5	4	80.0000
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.1997	99.7848	94.7452	59.6307	8348	18	8348	463	461	99.5680
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.3441	90.1387	94.6602	59.6342	585	64	585	33	29	87.8788
jlack-gatk	INDEL	I1_5	*	*	99.0273	98.9407	99.1140	59.6345	149068	1596	149119	1333	677	50.7877
ckim-gatk	INDEL	I6_15	HG002complexvar	het	99.3586	98.9384	99.7824	59.6346	2330	25	2293	5	4	80.0000
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2749	98.6108	99.9480	59.6368	3833	54	3843	2	2	100.0000
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.0284	97.0399	97.0169	59.6380	31045	947	33661	1035	709	68.5024
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6310	99.3209	99.9431	59.6415	1755	12	1755	1	1	100.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	80.6406	68.2128	98.6056	59.6463	500	233	495	7	6	85.7143
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5720	99.5845	99.5594	59.6473	27563	115	27568	122	11	9.0164
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1961	82.1429	100.0000	59.6491	69	15	69	0	0
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2945	99.6172	97.0064	59.6494	8328	32	8328	257	256	99.6109
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.9971	99.4760	96.5614	59.6546	1329	7	1376	49	1	2.0408
qzeng-custom	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	79.1080	66.2395	98.1818	59.6577	2533	1291	162	3	2	66.6667
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	93.1507	90.6667	95.7746	59.6591	68	7	68	3	2	66.6667
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1161	96.5935	99.6875	59.6596	1276	45	1276	4	3	75.0000
egarrison-hhga	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	94.4183	93.3511	95.5102	59.6597	702	50	702	33	22	66.6667
rpoplin-dv42	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.3437	97.5410	99.1597	59.6610	119	3	118	1	0	0.0000
ckim-vqsr	INDEL	I6_15	HG002complexvar	het	99.2942	98.8110	99.7821	59.6661	2327	28	2290	5	4	80.0000
hfeng-pmm1	INDEL	*	HG002compoundhet	*	94.8334	92.5834	97.1953	59.6665	27738	2222	27620	797	774	97.1142

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge