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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 649 650 651 652 653 654 655 656 657 ... 1720 1721 » 32601-32650 / 86044 show all
jli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.3930	99.3902	97.4155	59.5008	489	3	490	13	11	84.6154
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	90.5655	87.6892	93.6369	59.5069	3419	480	3414	232	224	96.5517
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	23.8908	17.7515	36.5217	59.5070	30	139	42	73	70	95.8904
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3840	98.8562	99.9174	59.5119	1210	14	1210	1	1	100.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5288	99.4462	99.6115	59.5139	19752	110	19745	77	49	63.6364
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9743	99.9743	99.9743	59.5146	3886	1	3886	1	1	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.7596	92.3754	99.4012	59.5152	315	26	332	2	2	100.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6346	99.4826	99.7870	59.5165	16344	85	17330	37	22	59.4595
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.1964	99.5935	96.8379	59.5200	490	2	490	16	15	93.7500
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	83.9455	85.0094	82.9080	59.5221	2257	398	3216	663	302	45.5505
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9743	99.9743	99.9743	59.5233	3886	1	3888	1	1	100.0000
ckim-dragen	INDEL	*	*	homalt	99.2636	99.8234	98.7101	59.5235	124951	221	124887	1632	1607	98.4681
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	64.1509	47.2222	100.0000	59.5238	17	19	17	0	0
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	23.2343	13.2530	94.1176	59.5238	11	72	16	1	1	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7985	99.2278	94.4853	59.5238	257	2	257	15	14	93.3333
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	28.5714	75.0000	17.6471	59.5238	6	2	6	28	28	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.9984	98.8832	99.1137	59.5275	15584	176	15433	138	107	77.5362
gduggal-bwafb	INDEL	D1_5	*	*	98.5809	98.0538	99.1138	59.5290	143889	2856	144727	1294	903	69.7836
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9711	98.6779	99.2660	59.5335	8285	111	8250	61	52	85.2459
raldana-dualsentieon	SNP	*	map_l100_m2_e1	homalt	99.8307	99.7302	99.9315	59.5367	27721	75	27721	19	15	78.9474
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	70.1864	58.1267	88.5602	59.5371	1266	912	1347	174	129	74.1379
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9614	99.9228	100.0000	59.5375	3884	3	3884	0	0
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.8272	96.9199	96.7347	59.5376	472	15	474	16	14	87.5000
ckim-vqsr	INDEL	D6_15	HG002complexvar	het	98.8682	98.6538	99.0835	59.5418	3078	42	3027	28	22	78.5714
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	0.0000	0.0000	16.9811	59.5420	0	27	9	44	12	27.2727
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	87.7317	98.1043	79.3427	59.5442	207	4	338	88	87	98.8636
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6646	99.3826	99.9483	59.5457	3863	24	3863	2	2	100.0000
ckim-isaac	INDEL	D16_PLUS	*	het	85.3103	83.3175	87.4007	59.5500	2632	527	2310	333	202	60.6607
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	83.6066	75.0000	94.4444	59.5506	6	2	34	2	2	100.0000
astatham-gatk	SNP	ti	map_l100_m2_e1	homalt	99.6312	99.3403	99.9239	59.5512	18372	122	18372	14	13	92.8571
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	47.3491	46.0834	48.6863	59.5527	14743	17249	14732	15527	15257	98.2611
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	0.0000	0.0000	28.0220	59.5556	0	388	51	131	41	31.2977
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.9102	92.5212	99.5569	59.5559	14264	1153	14381	64	58	90.6250
raldana-dualsentieon	SNP	*	map_l100_m2_e0	homalt	99.8291	99.7275	99.9308	59.5568	27448	75	27448	19	15	78.9474
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.8307	96.4864	99.2129	59.5573	8101	295	8067	64	55	85.9375
gduggal-snapvard	INDEL	I16_PLUS	HG002complexvar	het	3.1923	1.6541	45.5157	59.5648	11	654	203	243	141	58.0247
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4638	99.1979	99.7312	59.5652	371	3	371	1	0	0.0000
ltrigg-rtg2	INDEL	*	HG002compoundhet	*	96.7706	94.9266	98.6878	59.5666	28440	1520	28503	379	309	81.5303
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	86.5858	77.4194	98.2143	59.5668	216	63	220	4	4	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	59.1474	45.9330	83.0357	59.5668	96	113	93	19	17	89.4737
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.8149	98.0851	99.5556	59.5687	461	9	448	2	1	50.0000
astatham-gatk	SNP	ti	map_l100_m2_e0	homalt	99.6302	99.3391	99.9231	59.5727	18188	121	18188	14	13	92.8571
gduggal-bwaplat	INDEL	*	*	homalt	94.8233	90.5786	99.4855	59.5744	113379	11793	113311	586	499	85.1536
ltrigg-rtg1	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	*	89.2857	81.5217	98.6842	59.5745	75	17	75	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7543	99.5098	100.0000	59.5752	1218	6	1218	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0708	98.8304	99.3124	59.5757	4394	52	4333	30	22	73.3333
ltrigg-rtg2	SNP	tv	map_l125_m0_e0	*	98.1288	96.4862	99.8283	59.5773	6398	233	6396	11	0	0.0000

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