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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 643 644 645 646 647 648 649 650 651 ... 1720 1721 » 32301-32350 / 86044 show all
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.3150	97.0389	84.4624	59.0100	1147	35	1147	211	208	98.5782
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5504	99.4030	99.6982	59.0103	999	6	991	3	1	33.3333
rpoplin-dv42	INDEL	D1_5	*	homalt	99.7606	99.6505	99.8710	59.0122	48755	171	48760	63	56	88.8889
ltrigg-rtg1	SNP	ti	map_l100_m2_e0	*	99.3135	98.8379	99.7938	59.0138	48392	569	48394	100	29	29.0000
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5898	99.1830	100.0000	59.0142	1214	10	1214	0	0
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	86.2069	75.7576	100.0000	59.0164	25	8	25	0	0
qzeng-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	86.1163	83.9286	88.4211	59.0164	141	27	420	55	20	36.3636
gduggal-bwafb	SNP	tv	HG002compoundhet	het	96.4922	98.6946	94.3859	59.0165	4612	61	4657	277	52	18.7726
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.0365	96.2201	95.8537	59.0186	8044	316	8045	348	182	52.2989
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.0365	96.2201	95.8537	59.0186	8044	316	8045	348	182	52.2989
ciseli-custom	SNP	*	map_siren	*	89.7321	87.9989	91.5349	59.0239	128679	17549	128115	11848	2967	25.0422
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	88.1401	80.0632	98.0294	59.0247	2534	631	2537	51	48	94.1176
jli-custom	SNP	ti	map_l100_m2_e1	homalt	99.7997	99.6593	99.9404	59.0260	18431	63	18431	11	11	100.0000
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	46.3519	40.9091	53.4653	59.0264	99	143	108	94	71	75.5319
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	43.5378	41.1765	46.1864	59.0278	21	30	109	127	107	84.2520
jmaeng-gatk	INDEL	*	*	homalt	99.5485	99.8690	99.2301	59.0290	125008	164	125021	970	941	97.0103
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.6562	96.0265	99.3421	59.0296	145	6	151	1	1	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.3994	93.2746	99.7407	59.0297	1165	84	1154	3	3	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	*	99.3168	98.8481	99.7899	59.0336	48915	570	48917	103	29	28.1553
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.3740	98.3740	98.3740	59.0341	484	8	484	8	7	87.5000
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	87.3183	98.1551	78.6365	59.0389	3937	74	3968	1078	33	3.0612
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.5684	96.5352	96.6016	59.0391	15491	556	15492	545	381	69.9083
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	43.5741	29.8498	80.6598	59.0401	2842	6679	2836	680	595	87.5000
qzeng-custom	INDEL	I1_5	*	het	98.4046	98.3920	98.4173	59.0408	77770	1271	82639	1329	852	64.1084
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	97.7492	96.8153	98.7013	59.0426	152	5	152	2	1	50.0000
gduggal-snapvard	INDEL	*	HG002complexvar	het	85.1014	90.1233	80.6095	59.0444	41646	4564	51233	12324	8222	66.7154
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5931	99.6524	99.5338	59.0453	860	3	854	4	3	75.0000
jli-custom	SNP	ti	map_l100_m2_e0	homalt	99.8004	99.6614	99.9398	59.0453	18247	62	18247	11	11	100.0000
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	67.9552	65.9379	70.1000	59.0467	4011	2072	3927	1675	1645	98.2090
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	87.2924	84.6591	90.0947	59.0476	1043	189	1046	115	86	74.7826
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	52.9379	91.7293	37.2045	59.0488	366	33	362	611	566	92.6350
ckim-isaac	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	83.4407	85.5319	81.4493	59.0504	1206	204	1124	256	208	81.2500
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5440	99.8969	99.1935	59.0506	3874	4	3936	32	0	0.0000
mlin-fermikit	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	64.4614	84.9116	51.9498	59.0528	816	145	786	727	719	98.8996
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	33.1825	76.9231	21.1538	59.0551	10	3	11	41	40	97.5610
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	94.3571	90.9091	98.0769	59.0551	50	5	51	1	1	100.0000
qzeng-custom	INDEL	I16_PLUS	HG002compoundhet	homalt	5.3812	100.0000	2.7650	59.0566	3	0	6	211	173	81.9905
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	71.3699	57.0370	95.3237	59.0574	77	58	265	13	11	84.6154
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	56.3122	94.1558	40.1678	59.0614	435	27	431	642	610	95.0156
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	89.6138	97.3501	83.0166	59.0666	698	19	699	143	81	56.6434
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6091	98.6593	98.5590	59.0674	7285	99	7250	106	103	97.1698
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	26.7429	20.8134	37.3970	59.0695	174	662	227	380	217	57.1053
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	84.7458	91.1458	79.1855	59.0741	175	17	175	46	43	93.4783
dgrover-gatk	INDEL	I1_5	*	*	99.5294	99.3841	99.6753	59.0782	149736	928	149786	488	385	78.8934
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	74.0214	58.9765	99.3707	59.0788	2086	1451	12474	79	71	89.8734
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	het	89.2587	99.2593	81.0888	59.0856	402	3	283	66	63	95.4545
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	81.5062	79.9189	83.1579	59.0870	394	99	395	80	78	97.5000

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