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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 612 613 614 615 616 617 618 619 620 ... 1720 1721 » 30751-30800 / 86044 show all
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.4824	99.4939	99.4709	56.5517	1376	7	1316	7	1	14.2857
ghariani-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	86.2429	82.3474	90.5252	56.5548	877	188	879	92	63	68.4783
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	35.5104	33.6851	37.5449	56.5557	415	817	627	1043	747	71.6203
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	17.3176	9.5419	93.5644	56.5591	302	2863	189	13	13	100.0000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.5109	97.6402	99.3972	56.5597	11213	271	11213	68	60	88.2353
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	92.5203	90.3553	94.7917	56.5611	178	19	182	10	10	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	63.1130	55.0847	73.8806	56.5640	195	159	198	70	62	88.5714
ckim-gatk	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	56.5657	43	0	43	0	0
gduggal-bwafb	INDEL	D1_5	*	het	98.9590	98.4961	99.4263	56.5657	86257	1317	92550	534	170	31.8352
ckim-vqsr	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	56.5657	43	0	43	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.7273	95.5556	100.0000	56.5657	43	2	43	0	0
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1805	99.6759	98.6901	56.5693	3998	13	3993	53	5	9.4340
cchapple-custom	INDEL	I6_15	HG002complexvar	het	98.1734	97.1975	99.1692	56.5725	2289	66	3581	30	25	83.3333
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	*	99.3155	98.8275	99.8083	56.5736	47369	562	47371	91	27	29.6703
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	69.0793	87.2712	57.1635	56.5737	2146	313	6735	5047	4364	86.4672
jlack-gatk	SNP	tv	HG002compoundhet	het	98.9462	99.4650	98.4329	56.5753	4648	25	4648	74	14	18.9189
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2191	97.0917	99.3729	56.5754	2604	78	2694	17	17	100.0000
ciseli-custom	INDEL	I6_15	HG002complexvar	*	36.3268	24.7913	67.9389	56.5783	1188	3604	1157	546	471	86.2637
jmaeng-gatk	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
jli-custom	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
jlack-gatk	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.7495	97.6834	95.8333	56.5789	253	6	253	11	10	90.9091
hfeng-pmm1	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
egarrison-hhga	INDEL	I1_5	*	*	99.2965	99.0761	99.5179	56.5802	149272	1392	149236	723	442	61.1342
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.6003	96.5481	90.8273	56.5817	3636	130	3634	367	158	43.0518
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.6003	96.5481	90.8273	56.5817	3636	130	3634	367	158	43.0518
anovak-vg	INDEL	D6_15	HG002complexvar	homalt	78.9062	82.4636	75.6430	56.5846	964	205	1000	322	233	72.3602
ckim-isaac	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.5751	94.0794	99.2069	56.5853	33322	2097	33647	269	28	10.4089
ndellapenna-hhga	INDEL	D1_5	HG002complexvar	homalt	98.4078	98.9338	97.8875	56.5863	10485	113	10472	226	169	74.7788
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395
eyeh-varpipe	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.8170	99.3884	96.2946	56.5927	27788	171	27079	1042	134	12.8599
egarrison-hhga	INDEL	I6_15	HG002complexvar	het	96.7518	94.9894	98.5809	56.5929	2237	118	2223	32	9	28.1250
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	58.6032	44.0945	87.3418	56.5934	56	71	69	10	8	80.0000
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6888	99.4087	97.9793	56.5956	6052	36	6061	125	121	96.8000
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	86.0468	96.6402	77.5463	56.5992	3164	110	3723	1078	1046	97.0315
qzeng-custom	INDEL	*	*	*	96.8316	96.8703	96.7929	56.5999	333759	10783	347076	11500	5547	48.2348
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	26.7554	24.6259	29.2880	56.6011	181	554	181	437	436	99.7712
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	15.2225	9.4654	38.8554	56.6013	108	1033	129	203	109	53.6946
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	78.7206	65.5340	98.5507	56.6038	135	71	136	2	1	50.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	78.7206	65.5340	98.5507	56.6038	135	71	136	2	1	50.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	26.8074	23.6447	30.9468	56.6057	929	3000	925	2064	2051	99.3702
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.7491	97.4988	98.0006	56.6076	36954	948	36761	750	723	96.4000
gduggal-bwafb	INDEL	*	*	homalt	98.0353	98.2688	97.8029	56.6087	123005	2167	122991	2763	2706	97.9370
hfeng-pmm1	INDEL	I1_5	HG002complexvar	*	99.5778	99.2956	99.8615	56.6148	33128	235	33171	46	29	63.0435
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.1875	85.5072	100.0000	56.6176	59	10	59	0	0
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	46.0118	32.0942	81.2424	56.6189	2685	5681	2681	619	531	85.7835
ndellapenna-hhga	INDEL	D6_15	*	het	92.4134	97.5414	87.7976	56.6240	11307	285	12059	1676	1576	94.0334
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.0378	96.8281	99.2780	56.6258	15538	509	15539	113	101	89.3805
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	56.6265	36	3	36	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	96.0000	92.3077	100.0000	56.6265	36	3	36	0	0

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