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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
30601-30650 / 86044 show all
raldana-dualsentieonINDELD1_5*het
99.5220
99.2680
99.7773
56.3227
8693364186937194136
70.1031
ltrigg-rtg1INDELD1_5*homalt
99.7747
99.5851
99.9650
56.3253
48723203485961716
94.1176
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9232
99.8960
99.9505
56.3257
2017821201781010
100.0000
jpowers-varprowlINDELI6_15HG002complexvarhet
76.9804
82.9299
71.8274
56.3262
19534021981777772
99.3565
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
70.2572
87.5000
58.6914
56.3300
73151045726651144566
89.2843
ckim-isaacINDEL*HG002complexvarhetalt
77.5562
66.5856
92.8550
56.3369
246312363119240203
84.5833
hfeng-pmm3INDELI6_15HG002complexvarhetalt
97.0105
94.1946
100.0000
56.3370
115271119200
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3374
112924112921413
92.8571
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1330
96.7301
99.5772
56.3405
30381102730382129103
79.8450
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5589
100.0000
99.1217
56.3407
158001580140
0.0000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_51to200*
95.3553
92.3423
98.5714
56.3410
2051720731
33.3333
astatham-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9292
99.9646
99.8938
56.3468
112924112921211
91.6667
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5832
95.9437
99.2798
56.3557
3013412743018821993
42.4658
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.8170
96.5624
74.0438
56.3581
3736133425914931471
98.5265
ciseli-customINDEL*HG002complexvarhomalt
81.7869
88.0268
76.3731
56.3608
2379132362355572875323
73.0479
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
56.3613
343034300
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7942
99.6237
99.9652
56.3615
20123762012377
100.0000
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
96.5517
93.3333
100.0000
56.3636
7057200
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3643
112924112921413
92.8571
jli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9133
99.8812
99.9455
56.3725
201752420175117
63.6364
ckim-vqsrINDELD1_5HG002complexvarhet
99.6767
99.4799
99.8743
56.3731
20657108206612612
46.1538
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
48.1114
83.3977
33.8073
56.3749
21643214419397
94.7494
ckim-dragenINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9380
99.8938
56.3777
112897112841211
91.6667
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9557
99.8850
56.3788
112915112911312
92.3077
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
56.8293
53.5459
60.5416
56.3805
9748451252816596
73.0392
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3829
112924112921413
92.8571
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.9159
94.4855
99.4747
56.3830
793346379534213
30.9524
asubramanian-gatkINDELI6_15HG002complexvarhetalt
96.0912
93.1316
99.2450
56.3849
113984118397
77.7778
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9143
99.8827
99.9458
56.3849
11071131106764
66.6667
gduggal-bwafbINDEL***
96.9474
95.5004
98.4390
56.3888
3290391550334249254314691
86.3745
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.4762
82.6087
100.0000
56.3910
57125800
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
31.0781
20.3704
65.5172
56.3910
2286382020
100.0000
raldana-dualsentieonINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
77.3333
63.0435
100.0000
56.3910
58345800
gduggal-bwavardSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.1225
98.0932
96.1709
56.3915
1121521811076441100
22.6757
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9026
99.9292
99.8761
56.3916
112888112881413
92.8571
qzeng-customINDELD6_15HG002complexvarhomalt
94.3279
97.3482
91.4894
56.3918
113831116110853
49.0741
gduggal-bwafbINDELI1_5**
97.8814
96.8991
98.8838
56.3942
145992467214678916571400
84.4900
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
82.1918
84.5070
80.0000
56.3953
6011601515
100.0000
hfeng-pmm3INDELD1_5HG002compoundhethetalt
96.9544
94.1073
99.9792
56.3965
9614602961320
0.0000
ndellapenna-hhgaINDEL**het
97.8590
98.8060
96.9301
56.3967
191815231819332861235425
88.6004
ndellapenna-hhgaINDELD6_15HG002complexvarhet
92.6198
92.8205
92.4200
56.3998
28962242975244197
80.7377
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.6536
70.7724
91.0837
56.4003
275811391849181175
96.6851
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.0130
91.8782
84.4600
56.4024
1086961087200133
66.5000