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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 607 608 609 610 611 612 613 614 615 ... 1720 1721 » 30501-30550 / 86044 show all
astatham-gatk	INDEL	D1_5	HG002complexvar	het	99.6863	99.4751	99.8985	56.1634	20656	109	20662	21	12	57.1429
ndellapenna-hhga	INDEL	I6_15	HG002complexvar	*	96.1681	95.0125	97.3521	56.1640	4553	239	4559	124	74	59.6774
asubramanian-gatk	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	56.1644	32	1	32	0	0
dgrover-gatk	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	56.1644	32	1	32	0	0
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	59.4347	42.5101	98.7500	56.1644	105	142	158	2	2	100.0000
gduggal-snapfb	INDEL	I1_5	tech_badpromoters	*	81.4815	100.0000	68.7500	56.1644	22	0	22	10	0	0.0000
ltrigg-rtg2	SNP	*	map_l100_m2_e0	*	99.2235	98.6534	99.8003	56.1674	72968	996	72965	146	24	16.4384
dgrover-gatk	INDEL	I6_15	HG002complexvar	hetalt	97.3563	94.8487	100.0000	56.1679	1160	63	1201	0	0
qzeng-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	92.1962	96.6768	88.1125	56.1680	5411	186	12282	1657	662	39.9517
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9381	99.9734	99.9027	56.1708	11293	3	11293	11	11	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8847	89.4650	98.7637	56.1710	2157	254	2157	27	25	92.5926
anovak-vg	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	97.9194	98.3001	97.5417	56.1712	16885	292	17260	435	173	39.7701
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5289	99.3598	99.6985	56.1737	27780	179	27779	84	9	10.7143
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.6838	97.4223	97.9467	56.1751	36925	977	36731	770	739	95.9740
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	53.0409	42.6966	70.0000	56.1753	76	102	77	33	31	93.9394
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	93.9839	95.1498	92.8462	56.1753	10927	557	10928	842	429	50.9501
ciseli-custom	SNP	tv	tech_badpromoters	homalt	96.1368	97.4359	94.8718	56.1798	38	1	37	2	0	0.0000
ciseli-custom	INDEL	I1_5	*	*	87.1708	85.4583	88.9534	56.1825	128754	21909	128479	15955	13768	86.2927
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.1986	94.7313	99.7979	56.1836	5430	302	5431	11	9	81.8182
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	92.6051	97.9373	87.8236	56.1886	11063	233	11468	1590	1468	92.3270
mlin-fermikit	INDEL	D1_5	*	*	96.7247	95.7954	97.6723	56.1904	140575	6170	140399	3346	3212	95.9952
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	96.6037	94.0559	99.2933	56.1920	269	17	281	2	2	100.0000
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.1773	98.9247	99.4312	56.1924	1748	19	1748	10	10	100.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.9868	95.2804	94.6949	56.1929	10942	542	10942	613	287	46.8189
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	82.5092	75.5024	90.9494	56.1947	6349	2060	6351	632	617	97.6266
gduggal-bwaplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	93.3264	87.6955	99.7299	56.2023	8859	1243	8863	24	19	79.1667
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4473	99.1113	99.7856	56.2027	16283	146	16290	35	23	65.7143
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7701	99.9578	97.6102	56.2071	2369	1	2369	58	57	98.2759
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7701	99.9578	97.6102	56.2071	2369	1	2369	58	57	98.2759
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het	62.9921	66.6667	59.7015	56.2092	6	3	40	27	24	88.8889
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	29.4118	42.8571	22.3881	56.2092	15	20	15	52	24	46.1538
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	85.4267	79.7078	92.0297	56.2094	982	250	993	86	52	60.4651
gduggal-snapfb	SNP	tv	HG002compoundhet	het	69.0686	96.5761	53.7572	56.2100	4513	160	4600	3957	124	3.1337
ciseli-custom	SNP	tv	map_siren	homalt	92.1923	91.6589	92.7320	56.2107	15802	1438	15770	1236	874	70.7120
ltrigg-rtg2	SNP	*	map_l100_m2_e1	*	99.2263	98.6673	99.7916	56.2116	73741	996	73738	154	24	15.5844
ckim-dragen	SNP	ti	map_l100_m0_e0	homalt	99.4968	99.1896	99.8059	56.2121	7711	63	7714	15	14	93.3333
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	70.4679	70.6667	70.2703	56.2130	53	22	52	22	19	86.3636
gduggal-snapplat	SNP	*	HG002compoundhet	*	83.9950	90.1789	78.6048	56.2142	23286	2536	23381	6364	715	11.2351
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9052	99.8917	99.9188	56.2157	11072	12	11068	9	4	44.4444
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	81.2534	85.2901	77.5815	56.2165	632	109	571	165	144	87.2727
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	95.1518	97.8124	92.6322	56.2191	10865	243	11001	875	754	86.1714
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8578	99.8307	99.8849	56.2250	14745	25	14747	17	4	23.5294
hfeng-pmm3	INDEL	I6_15	*	het	98.8597	98.1362	99.5939	56.2294	9846	187	9811	40	29	72.5000
hfeng-pmm1	SNP	tv	map_siren	*	99.7188	99.5885	99.8494	56.2301	45741	189	45734	69	22	31.8841
egarrison-hhga	INDEL	I1_5	HG002compoundhet	hetalt	97.3530	95.2492	99.5519	56.2316	10646	531	10663	48	44	91.6667
raldana-dualsentieon	SNP	ti	map_l100_m1_e0	homalt	99.8161	99.7049	99.9275	56.2318	17907	53	17907	13	12	92.3077
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
gduggal-bwavard	INDEL	I6_15	HG002complexvar	het	78.6071	93.9278	67.5834	56.2348	2212	143	2187	1049	981	93.5176
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	75.3026	95.6815	62.0803	56.2366	709	32	758	463	445	96.1123
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	84.4065	96.1747	75.2044	56.2444	3721	148	4416	1456	1419	97.4588

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