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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 604 605 606 607 608 609 610 611 612 ... 1720 1721 » 30351-30400 / 86044 show all
ghariani-varprowl	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8165	99.8119	95.8994	55.8743	10083	19	10103	432	262	60.6481
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	59.9593	59.9593	59.9593	55.8744	295	197	295	197	173	87.8173
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7868	99.6845	99.8894	55.8752	25279	80	25282	28	15	53.5714
hfeng-pmm2	INDEL	*	*	homalt	99.6594	99.8043	99.5149	55.8756	124927	245	124935	609	588	96.5517
egarrison-hhga	SNP	tv	map_siren	homalt	99.8636	99.7854	99.9419	55.8765	17203	37	17203	10	9	90.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	92.7674	88.8428	97.0548	55.8776	2142	269	2142	65	63	96.9231
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	55.8824	12	0	15	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	55.8824	13	0	13	2	2	100.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	55.8824	13	0	13	2	2	100.0000
ghariani-varprowl	INDEL	D6_15	tech_badpromoters	*	87.5000	82.3529	93.3333	55.8824	14	3	14	1	1	100.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	40.0000	40.0000	40.0000	55.8824	30	45	42	63	42	66.6667
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.9631	100.0000	97.9475	55.8853	858	0	859	18	12	66.6667
jlack-gatk	INDEL	I1_5	*	homalt	99.5330	99.8014	99.2660	55.8866	60308	120	60314	446	434	97.3094
hfeng-pmm3	SNP	tv	map_siren	homalt	99.8898	99.8724	99.9071	55.8869	17218	22	17215	16	8	50.0000
qzeng-custom	SNP	ti	*	hetalt	98.0808	96.9072	99.2832	55.8893	564	18	554	4	4	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.3017	99.1632	99.4406	55.8914	711	6	711	4	3	75.0000
jli-custom	INDEL	I1_5	HG002complexvar	*	99.4264	98.9689	99.8882	55.8919	33019	344	33052	37	27	72.9730
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.0559	96.7947	99.3503	55.8922	41946	1389	42206	276	166	60.1449
ckim-gatk	SNP	tv	HG002compoundhet	het	99.2595	98.9728	99.5478	55.8932	4625	48	4623	21	13	61.9048
jpowers-varprowl	SNP	*	map_siren	homalt	99.5443	99.4144	99.6746	55.8957	54833	323	54834	179	129	72.0670
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8544	100.0000	99.7093	55.8974	343	0	343	1	0	0.0000
ckim-vqsr	INDEL	D6_15	*	*	98.2389	97.9189	98.5610	55.8987	25549	543	25548	373	340	91.1528
gduggal-snapfb	INDEL	I1_5	HG002complexvar	het	93.2070	95.4203	91.0940	55.8992	17356	833	18135	1773	467	26.3395
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.0612	88.8224	97.7248	55.9006	890	112	902	21	19	90.4762
ltrigg-rtg2	SNP	ti	map_l100_m2_e1	*	99.2480	98.6784	99.8242	55.9018	48831	654	48833	86	19	22.0930
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	33.9034	47.8673	26.2467	55.9028	101	110	100	281	269	95.7295
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.0161	99.9052	96.1971	55.9029	3162	3	3162	125	124	99.2000
ckim-gatk	INDEL	*	*	hetalt	95.5159	91.6749	99.6928	55.9040	23136	2101	23365	72	70	97.2222
jlack-gatk	INDEL	I6_15	HG002complexvar	homalt	97.1497	99.6705	94.7533	55.9047	1210	4	1210	67	66	98.5075
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	52.0907	81.7259	38.2284	55.9096	161	36	164	265	242	91.3208
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	93.5778	96.7372	90.6183	55.9107	1601	54	1700	176	163	92.6136
mlin-fermikit	SNP	tv	map_l150_m1_e0	homalt	59.5283	52.1287	69.3761	55.9108	2057	1889	2057	908	841	92.6211
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	86.1765	80.9208	92.1623	55.9146	1951	460	1999	170	145	85.2941
ckim-vqsr	INDEL	*	*	hetalt	95.4941	91.6313	99.6969	55.9167	23125	2112	23354	71	70	98.5915
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.0502	96.8343	99.2971	55.9217	15539	508	15540	110	95	86.3636
hfeng-pmm1	INDEL	*	HG002complexvar	homalt	99.7782	99.8372	99.7192	55.9241	26983	44	26991	76	70	92.1053
ndellapenna-hhga	INDEL	I1_5	*	*	99.2393	98.9360	99.5445	55.9242	149061	1603	149032	682	431	63.1965
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	88.1356	78.7879	100.0000	55.9322	26	7	26	0	0
qzeng-custom	SNP	ti	map_l100_m1_e0	homalt	87.7858	78.5523	99.4792	55.9352	14108	3852	13944	73	71	97.2603
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	80.9919	72.4294	91.8503	55.9362	1923	732	2209	196	151	77.0408
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	73.8152	89.0909	63.0112	55.9378	343	42	339	199	180	90.4523
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.6407	94.7230	98.6376	55.9424	359	20	362	5	5	100.0000
jlack-gatk	INDEL	D1_5	HG002complexvar	het	99.5570	99.5377	99.5763	55.9428	20669	96	20681	88	29	32.9545
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.9485	97.2350	98.6726	55.9454	211	6	223	3	3	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2376	96.9527	97.5243	55.9478	36747	1155	36556	928	901	97.0905
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	77.8604	71.7514	85.1064	55.9513	254	100	400	70	67	95.7143
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.0554	100.0000	96.1851	55.9528	2370	0	2370	94	93	98.9362
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4669	99.6693	99.2653	55.9536	3918	13	3918	29	0	0.0000
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	25.2937	22.4179	29.0158	55.9542	471	1630	513	1255	1101	87.7291
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9292	99.9026	55.9613	11288	8	11288	11	10	90.9091

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