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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 603 604 605 606 607 608 609 610 611 ... 1720 1721 » 30301-30350 / 86044 show all
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.2451	95.3502	99.2167	55.7798	8018	391	8107	64	58	90.6250
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7559	99.5579	99.9547	55.7919	11035	49	11032	5	2	40.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7712	99.7476	99.7949	55.7977	25295	64	25298	52	25	48.0769
raldana-dualsentieon	INDEL	I1_5	HG002compoundhet	hetalt	95.4154	91.2409	99.9902	55.7998	10198	979	10253	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5088	99.0743	99.9471	55.8025	17018	159	17015	9	6	66.6667
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8126	99.7437	99.8815	55.8039	25294	65	25297	30	17	56.6667
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3863	99.1243	99.6497	55.8050	566	5	569	2	1	50.0000
cchapple-custom	INDEL	D1_5	*	*	99.4223	99.1584	99.6877	55.8052	145510	1235	145535	456	300	65.7895
egarrison-hhga	SNP	tv	map_siren	*	99.6246	99.3686	99.8818	55.8072	45640	290	45640	54	25	46.2963
dgrover-gatk	INDEL	I6_15	HG002complexvar	homalt	98.5378	99.9176	97.1955	55.8074	1213	1	1213	35	35	100.0000
bgallagher-sentieon	INDEL	I6_15	HG002complexvar	hetalt	96.5751	93.3769	100.0000	55.8131	1142	81	1182	0	0
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.0901	99.5957	98.5896	55.8133	6159	25	6291	90	2	2.2222
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.9010	92.8196	92.9825	55.8140	530	41	530	40	38	95.0000
qzeng-custom	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	55.8140	22	0	19	0	0
ckim-gatk	INDEL	I1_5	HG002compoundhet	hetalt	95.6413	91.6793	99.9612	55.8202	10247	930	10308	4	4	100.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9159	99.9115	99.9203	55.8220	11286	10	11286	9	9	100.0000
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.3706	96.6600	84.8496	55.8282	9203	318	9196	1642	1614	98.2948
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	92.7463	87.9765	98.0630	55.8289	300	41	405	8	8	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	95.3063	91.2223	99.7730	55.8289	10538	1014	10551	24	18	75.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.3063	91.2223	99.7730	55.8289	10538	1014	10551	24	18	75.0000
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	78.1643	64.5833	98.9779	55.8315	589	323	581	6	5	83.3333
gduggal-bwaplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.1490	96.3652	100.0000	55.8357	1087	41	1086	0	0
hfeng-pmm3	INDEL	*	HG002complexvar	homalt	99.7967	99.8594	99.7340	55.8371	26989	38	26999	72	66	91.6667
gduggal-bwavard	SNP	tv	HG002compoundhet	het	81.7704	86.9463	77.1761	55.8414	4063	610	4504	1332	1169	87.7628
ckim-vqsr	INDEL	I1_5	HG002compoundhet	hetalt	95.5975	91.5988	99.9612	55.8418	10238	939	10299	4	4	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1456	99.7794	96.5643	55.8438	9500	21	9500	338	334	98.8166
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2034	96.5701	97.8450	55.8440	36602	1300	36414	802	774	96.5087
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	60.5878	57.3058	64.2686	55.8452	6581	4903	7763	4316	3401	78.7998
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	91.9906	90.0000	94.0711	55.8464	243	27	238	15	3	20.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7571	99.6017	99.9130	55.8468	25258	101	25261	22	14	63.6364
ltrigg-rtg2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.2206	92.5954	97.9989	55.8475	3689	295	3722	76	35	46.0526
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	97.3969	99.2733	95.5900	55.8480	3142	23	3143	145	133	91.7241
cchapple-custom	SNP	*	map_l100_m1_e0	homalt	98.7154	97.4707	99.9924	55.8509	26320	683	26310	2	2	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1504	99.7689	96.5836	55.8513	9499	22	9499	336	332	98.8095
asubramanian-gatk	SNP	tv	HG002compoundhet	het	98.0320	96.4691	99.6463	55.8548	4508	165	4508	16	9	56.2500
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	97.8983	96.2840	99.5676	55.8569	5519	213	5527	24	18	75.0000
eyeh-varpipe	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4099	99.4850	99.3350	55.8574	10045	52	9410	63	21	33.3333
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	69.0901	55.6851	90.9953	55.8577	191	152	192	19	18	94.7368
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	62.6355	82.0408	50.6542	55.8581	402	88	542	528	513	97.1591
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.7368	98.6632	98.8105	55.8582	11145	151	11131	134	133	99.2537
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.8527	99.9044	97.8230	55.8586	8358	8	8358	186	184	98.9247
ckim-gatk	INDEL	D6_15	*	*	98.2230	97.9802	98.4670	55.8597	25565	527	25564	398	344	86.4322
eyeh-varpipe	INDEL	I6_15	HG002compoundhet	het	24.7604	59.6154	15.6250	55.8621	124	84	70	378	375	99.2063
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	58.0405	54.1246	62.5672	55.8642	35371	29980	43558	26060	19700	75.5948
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	58.0405	54.1246	62.5672	55.8642	35371	29980	43558	26060	19700	75.5948
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7284	99.9156	97.5690	55.8647	2368	2	2368	59	57	96.6102
rpoplin-dv42	INDEL	D1_5	HG002compoundhet	hetalt	96.8685	94.3226	99.5556	55.8683	9636	580	9632	43	42	97.6744
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	*	99.2429	98.6642	99.8285	55.8705	48307	654	48309	83	19	22.8916
hfeng-pmm3	INDEL	I1_5	HG002compoundhet	hetalt	97.1381	94.4439	99.9906	55.8738	10556	621	10614	1	1	100.0000

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