PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29551-29600 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | * | het | 70.9404 | 91.9945 | 57.7285 | 54.4042 | 10664 | 928 | 10689 | 7827 | 7764 | 99.1951 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | het | 98.1510 | 96.8794 | 99.4564 | 54.4051 | 20117 | 648 | 20856 | 114 | 44 | 38.5965 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.4168 | 88.8435 | 94.1435 | 54.4059 | 653 | 82 | 643 | 40 | 39 | 97.5000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | het | 98.4494 | 97.1855 | 99.7466 | 54.4068 | 9841 | 285 | 9840 | 25 | 2 | 8.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8105 | 99.6688 | 99.9525 | 54.4112 | 25275 | 84 | 25277 | 12 | 7 | 58.3333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.6732 | 71.7391 | 84.6774 | 54.4118 | 66 | 26 | 105 | 19 | 19 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | * | * | 74.7295 | 62.4588 | 93.0005 | 54.4140 | 3983 | 2394 | 3986 | 300 | 193 | 64.3333 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.5909 | 54.8571 | 98.9796 | 54.4186 | 96 | 79 | 97 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8767 | 99.8193 | 99.9342 | 54.4187 | 6077 | 11 | 6077 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | * | 92.2263 | 91.5275 | 92.9358 | 54.4267 | 4386 | 406 | 4473 | 340 | 144 | 42.3529 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 90.6611 | 90.9091 | 90.4145 | 54.4274 | 340 | 34 | 349 | 37 | 21 | 56.7568 | |
| ghariani-varprowl | INDEL | * | func_cds | het | 90.6725 | 97.6636 | 84.6154 | 54.4280 | 209 | 5 | 209 | 38 | 29 | 76.3158 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8473 | 99.8104 | 95.9599 | 54.4297 | 3159 | 6 | 3159 | 133 | 131 | 98.4962 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.0475 | 46.9799 | 83.1858 | 54.4355 | 70 | 79 | 94 | 19 | 19 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.0237 | 77.1739 | 92.2078 | 54.4379 | 71 | 21 | 71 | 6 | 4 | 66.6667 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.4380 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002complexvar | * | 99.1020 | 98.6275 | 99.5810 | 54.4390 | 32266 | 449 | 32088 | 135 | 85 | 62.9630 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2043 | 97.0166 | 97.3928 | 54.4393 | 10959 | 337 | 10945 | 293 | 257 | 87.7133 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3316 | 99.5905 | 99.0741 | 54.4458 | 2675 | 11 | 2675 | 25 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.4063 | 91.4601 | 99.7085 | 54.4489 | 332 | 31 | 342 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7851 | 78.2485 | 92.5134 | 54.4520 | 1644 | 457 | 1557 | 126 | 122 | 96.8254 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.9036 | 99.8930 | 94.0880 | 54.4523 | 2801 | 3 | 2801 | 176 | 175 | 99.4318 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7099 | 99.7915 | 99.6285 | 54.4538 | 6702 | 14 | 6704 | 25 | 8 | 32.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1949 | 97.6719 | 98.7235 | 54.4572 | 21732 | 518 | 21733 | 281 | 265 | 94.3060 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.5597 | 98.9214 | 96.2349 | 54.4582 | 642 | 7 | 639 | 25 | 25 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6201 | 99.5533 | 99.6870 | 54.4597 | 6686 | 30 | 6688 | 21 | 7 | 33.3333 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.4643 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.4643 | 51 | 10 | 51 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.1134 | 93.7764 | 88.5975 | 54.4652 | 1552 | 103 | 1554 | 200 | 192 | 96.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.0746 | 98.4739 | 97.6786 | 54.4653 | 24972 | 387 | 25036 | 595 | 449 | 75.4622 | |
| egarrison-hhga | INDEL | * | HG002complexvar | het | 97.6548 | 97.3665 | 97.9448 | 54.4695 | 44995 | 1217 | 44989 | 944 | 675 | 71.5042 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4987 | 99.1235 | 99.8768 | 54.4784 | 16285 | 144 | 16208 | 20 | 7 | 35.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6468 | 99.8821 | 99.4127 | 54.4823 | 2541 | 3 | 2539 | 15 | 1 | 6.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9104 | 91.7791 | 94.0700 | 54.4828 | 3606 | 323 | 3601 | 227 | 215 | 94.7137 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.0062 | 96.7177 | 99.3296 | 54.4844 | 19536 | 663 | 19261 | 130 | 58 | 44.6154 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | * | 73.5756 | 61.3876 | 91.8021 | 54.4848 | 30056 | 18905 | 30056 | 2684 | 2362 | 88.0030 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6427 | 99.5150 | 99.7707 | 54.4892 | 25236 | 123 | 25236 | 58 | 45 | 77.5862 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 43.3697 | 38.1944 | 50.1672 | 54.4901 | 110 | 178 | 300 | 298 | 216 | 72.4832 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.6444 | 99.7860 | 95.5928 | 54.4932 | 2798 | 6 | 2798 | 129 | 127 | 98.4496 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.2273 | 86.8923 | 91.6913 | 54.4965 | 3414 | 515 | 3410 | 309 | 298 | 96.4401 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4672 | 99.8135 | 97.1567 | 54.5004 | 1606 | 3 | 1606 | 47 | 36 | 76.5957 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5798 | 99.2191 | 94.0773 | 54.5022 | 18041 | 142 | 18092 | 1139 | 144 | 12.6427 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7436 | 97.0652 | 98.4317 | 54.5032 | 21597 | 653 | 21590 | 344 | 335 | 97.3837 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3982 | 97.2756 | 99.5471 | 54.5040 | 3035 | 85 | 3077 | 14 | 13 | 92.8571 | |
| rpoplin-dv42 | SNP | * | map_siren | * | 99.6224 | 99.5097 | 99.7354 | 54.5067 | 145511 | 717 | 145497 | 386 | 225 | 58.2902 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7468 | 99.7171 | 99.7766 | 54.5091 | 6697 | 19 | 6699 | 15 | 8 | 53.3333 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3852 | 99.0251 | 99.7479 | 54.5094 | 14626 | 144 | 14641 | 37 | 15 | 40.5405 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.0645 | 96.5066 | 93.6649 | 54.5130 | 1326 | 48 | 19117 | 1293 | 1186 | 91.7247 | |