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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
28051-28100 / 86044 show all
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
45.9726
41.2090
51.9814
51.1983
916913081915684588386
99.1487
gduggal-bwavardSNPtvtech_badpromoters*
91.8292
86.1111
98.3607
51.2000
62106010
0.0000
qzeng-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.5108
70.3401
63.0769
51.2012
517218615360185
51.3889
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.2521
95.5720
98.9924
51.2038
284913228492929
100.0000
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.6525
87.0027
94.6221
51.2057
9841476513736
97.2973
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.7184
99.3562
96.1338
51.2081
6636436639267254
95.1311
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4749
99.2515
99.6992
51.2106
132610132640
0.0000
qzeng-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
97.3151
97.0053
97.6268
51.2109
165251538913184
64.1221
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
31.8686
65.5405
21.0526
51.2162
975176285285
100.0000
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.3915
95.8068
99.0295
51.2175
285612528572823
82.1429
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
86.4064
90.9774
82.2727
51.2195
363363627878
100.0000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
52.2378
37.7049
85.0000
51.2195
23381732
66.6667
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
20.8696
12.0000
80.0000
51.2195
151101643
75.0000
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
80.5197
68.3077
98.0488
51.2195
6663098041613
81.2500
ckim-isaacINDELI1_5tech_badpromoters*
95.2381
90.9091
100.0000
51.2195
2022000
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
69.5282
53.7870
98.2949
51.2231
9808429801716
94.1176
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1090
96.6453
99.6177
51.2288
573319957332220
90.9091
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7650
99.8824
99.6479
51.2307
849184933
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7650
99.8824
99.6479
51.2307
849184933
100.0000
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.6959
90.9221
96.6443
51.2348
3175317316811081
73.6364
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0688
96.6376
77.5838
51.2369
121004211315238003663
96.3947
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
70.1721
68.3616
72.0812
51.2376
121561425550
90.9091
gduggal-snapplatSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
89.0395
80.9340
98.9493
51.2411
5459128654625826
44.8276
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
85.6369
75.2427
99.3631
51.2422
1555115611
100.0000
ciseli-customINDELD6_15HG002compoundhethet
21.2896
17.8947
26.2741
51.2425
1537025311490935
62.7517
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9260
99.9343
99.9177
51.2440
60844607052
40.0000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
95.0350
97.4018
92.7804
51.2443
161243276321542
19.5349
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.1976
99.0717
99.3238
51.2490
66176266104542
93.3333
asubramanian-gatkSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.2500
3813811
100.0000
ckim-dragenSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.2500
3813811
100.0000
jli-customSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.2500
3813811
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.6797
99.5705
99.7890
51.2505
1182451118262520
80.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
53.6585
91.6667
37.9310
51.2605
222223636
100.0000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3072
99.1321
99.4829
51.2667
36553236551916
84.2105
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
49.6345
46.9154
52.6882
51.2725
327370343308167
54.2208
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
100.0000
99.8638
51.2807
36660366655
100.0000
ltrigg-rtg2INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.4359
95.0000
100.0000
51.2821
1911900
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4741
99.1018
99.8492
51.2858
132412132420
0.0000
eyeh-varpipeINDELD16_PLUS**
59.3408
53.1250
67.2039
51.2916
36043180358617501709
97.6571
jli-customINDELD6_15**
98.6381
98.1220
99.1595
51.2932
2560249025602217202
93.0876
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9318
99.9727
99.8910
51.2943
36651366544
100.0000
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.8494
96.0631
99.7034
51.2998
663727267242010
50.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
23.2825
16.1074
41.9847
51.3011
24125557663
82.8947
ltrigg-rtg1INDELD1_5HG002complexvarhet
99.1733
98.7383
99.6122
51.3027
20503262202947931
39.2405
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.4903
94.0829
99.0241
51.3046
558135155815550
90.9091
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8366
99.9727
99.7008
51.3048
3665136651111
100.0000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.0761
71.5124
85.9666
51.3057
79253157803113111160
88.4821
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9052
100.0000
99.8105
51.3073
15800158030
0.0000
qzeng-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
82.5257
80.7309
84.4021
51.3080
4861164879065
72.2222