PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27551-27600 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | het | 71.2910 | 94.8148 | 57.1195 | 50.0000 | 384 | 21 | 349 | 262 | 262 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | func_cds | het | 98.2249 | 100.0000 | 96.5116 | 50.0000 | 85 | 0 | 83 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | * | 85.9267 | 90.6977 | 81.6327 | 50.0000 | 39 | 4 | 40 | 9 | 1 | 11.1111 | |
| qzeng-custom | INDEL | D6_15 | func_cds | het | 85.5576 | 89.6552 | 81.8182 | 50.0000 | 26 | 3 | 27 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | homalt | 89.6552 | 100.0000 | 81.2500 | 50.0000 | 12 | 0 | 13 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 73.6842 | 58.3333 | 100.0000 | 50.0000 | 7 | 5 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.0488 | 64.0000 | 100.0000 | 50.0000 | 16 | 9 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 4.7619 | 50.0000 | 0 | 0 | 2 | 40 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | tech_badpromoters | * | 94.6667 | 93.4211 | 95.9459 | 50.0000 | 71 | 5 | 71 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9267 | 99.8738 | 97.9975 | 50.0103 | 4747 | 6 | 4747 | 97 | 96 | 98.9691 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3323 | 99.0070 | 93.7984 | 50.0158 | 7378 | 74 | 7396 | 489 | 75 | 15.3374 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4235 | 99.0875 | 99.7618 | 50.0170 | 2932 | 27 | 2932 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.6255 | 74.3733 | 24.2948 | 50.0227 | 267 | 92 | 267 | 832 | 775 | 93.1490 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.3156 | 74.9046 | 75.7313 | 50.0285 | 2943 | 986 | 3314 | 1062 | 550 | 51.7891 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1213 | 99.5294 | 98.7165 | 50.0292 | 846 | 4 | 846 | 11 | 10 | 90.9091 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.9550 | 96.3415 | 99.6234 | 50.0434 | 3397 | 129 | 3439 | 13 | 12 | 92.3077 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.9550 | 96.3415 | 99.6234 | 50.0434 | 3397 | 129 | 3439 | 13 | 12 | 92.3077 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0423 | 98.7194 | 99.3672 | 50.0468 | 4240 | 55 | 4240 | 27 | 2 | 7.4074 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6816 | 97.8606 | 97.5032 | 50.0471 | 17794 | 389 | 17573 | 450 | 107 | 23.7778 | |
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | het | 99.1949 | 98.9300 | 99.4612 | 50.0484 | 4623 | 50 | 4615 | 25 | 5 | 20.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.3731 | 72.7114 | 89.8397 | 50.0523 | 11668 | 4379 | 12441 | 1407 | 1388 | 98.6496 | |