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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26551-26600 / 86044 show all | |||||||||||||||
raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4036 | 94.8289 | 98.0315 | 47.7581 | 1247 | 68 | 1245 | 25 | 21 | 84.0000 | |
ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5243 | 99.3038 | 99.7457 | 47.7582 | 1569 | 11 | 1569 | 4 | 0 | 0.0000 | |
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.0540 | 83.9806 | 99.4286 | 47.7612 | 173 | 33 | 174 | 1 | 1 | 100.0000 | |
ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.4617 | 73.6541 | 96.2825 | 47.7670 | 2572 | 920 | 2590 | 100 | 75 | 75.0000 | |
gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.9148 | 73.4651 | 97.8302 | 47.7704 | 706 | 255 | 2074 | 46 | 36 | 78.2609 | |
jpowers-varprowl | INDEL | * | HG002complexvar | homalt | 94.9661 | 93.9024 | 96.0543 | 47.7714 | 25379 | 1648 | 25269 | 1038 | 887 | 85.4528 | |
eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 51.6769 | 55.4825 | 48.3599 | 47.7729 | 506 | 406 | 516 | 551 | 538 | 97.6407 | |
jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.0960 | 96.8307 | 99.3948 | 47.7739 | 5744 | 188 | 5748 | 35 | 30 | 85.7143 | |
gduggal-bwaplat | INDEL | I6_15 | * | hetalt | 85.2525 | 75.5818 | 97.7610 | 47.7759 | 6463 | 2088 | 6462 | 148 | 138 | 93.2432 | |
bgallagher-sentieon | INDEL | D6_15 | HG002complexvar | hetalt | 94.0808 | 91.9052 | 96.3618 | 47.7926 | 931 | 82 | 980 | 37 | 37 | 100.0000 | |
gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6476 | 70.4805 | 99.8919 | 47.7991 | 924 | 387 | 924 | 1 | 1 | 100.0000 | |
jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.6412 | 91.8702 | 73.4619 | 47.8010 | 6170 | 546 | 6173 | 2230 | 2203 | 98.7892 | |
jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 70.9325 | 55.3834 | 98.6207 | 47.8042 | 715 | 576 | 715 | 10 | 9 | 90.0000 | |
egarrison-hhga | INDEL | D6_15 | HG002compoundhet | het | 59.7254 | 89.0187 | 44.9378 | 47.8055 | 762 | 94 | 1336 | 1637 | 1603 | 97.9230 | |
jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.3960 | 85.9155 | 46.5649 | 47.8088 | 61 | 10 | 61 | 70 | 70 | 100.0000 | |
ltrigg-rtg2 | INDEL | I16_PLUS | * | het | 93.4104 | 88.2634 | 99.1949 | 47.8107 | 2399 | 319 | 2341 | 19 | 7 | 36.8421 | |
gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.0743 | 45.0588 | 99.7382 | 47.8142 | 383 | 467 | 381 | 1 | 1 | 100.0000 | |
hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4277 | 95.1629 | 99.8030 | 47.8149 | 964 | 49 | 1013 | 2 | 1 | 50.0000 | |
ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.8581 | 70.0143 | 98.5246 | 47.8186 | 488 | 209 | 601 | 9 | 7 | 77.7778 | |
hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5463 | 99.1745 | 99.9208 | 47.8198 | 2523 | 21 | 2523 | 2 | 0 | 0.0000 | |
ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7677 | 99.8606 | 99.6750 | 47.8198 | 2149 | 3 | 2147 | 7 | 7 | 100.0000 | |
ckim-isaac | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7634 | 99.8753 | 99.6517 | 47.8261 | 4006 | 5 | 4006 | 14 | 0 | 0.0000 | |
hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.7722 | 94.3320 | 99.3421 | 47.8261 | 233 | 14 | 453 | 3 | 3 | 100.0000 | |
gduggal-snapplat | INDEL | I6_15 | func_cds | * | 29.0909 | 18.6047 | 66.6667 | 47.8261 | 8 | 35 | 8 | 4 | 0 | 0.0000 | |
jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | het | 70.0000 | 87.5000 | 58.3333 | 47.8261 | 7 | 1 | 7 | 5 | 5 | 100.0000 | |
eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 47.8261 | 11 | 2 | 12 | 0 | 0 | ||
gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 88.0000 | 84.6154 | 91.6667 | 47.8261 | 11 | 2 | 11 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7122 | 99.4260 | 100.0000 | 47.8270 | 2425 | 14 | 2425 | 0 | 0 | ||
ltrigg-rtg2 | SNP | * | map_siren | * | 99.4570 | 99.1479 | 99.7681 | 47.8411 | 144981 | 1246 | 144975 | 337 | 38 | 11.2760 | |
gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | het | 94.6747 | 91.3773 | 98.2190 | 47.8412 | 1579 | 149 | 7831 | 142 | 74 | 52.1127 | |
gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2657 | 99.6737 | 96.8970 | 47.8485 | 2749 | 9 | 2748 | 88 | 17 | 19.3182 | |
qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | * | 72.9335 | 66.6356 | 80.5461 | 47.8493 | 1428 | 715 | 1416 | 342 | 260 | 76.0234 | |
ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1399 | 97.6669 | 98.6176 | 47.8517 | 17833 | 426 | 17834 | 250 | 247 | 98.8000 | |
qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.8053 | 79.1762 | 86.7830 | 47.8544 | 346 | 91 | 348 | 53 | 41 | 77.3585 | |
egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8822 | 98.9362 | 98.8283 | 47.8545 | 3627 | 39 | 3627 | 43 | 30 | 69.7674 | |
anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0855 | 98.2042 | 97.9671 | 47.8546 | 3992 | 73 | 4048 | 84 | 36 | 42.8571 | |
ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0431 | 98.1043 | 100.0000 | 47.8589 | 207 | 4 | 207 | 0 | 0 | ||
ckim-vqsr | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 47.8632 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
ltrigg-rtg1 | SNP | ti | map_siren | het | 99.2961 | 98.9388 | 99.6561 | 47.8678 | 61719 | 662 | 61718 | 213 | 10 | 4.6948 | |
ltrigg-rtg2 | INDEL | I16_PLUS | * | * | 92.6024 | 87.3765 | 98.4933 | 47.8680 | 5572 | 805 | 5491 | 84 | 71 | 84.5238 | |
qzeng-custom | SNP | * | tech_badpromoters | * | 96.8273 | 98.0892 | 95.5975 | 47.8689 | 154 | 3 | 152 | 7 | 1 | 14.2857 | |
egarrison-hhga | SNP | * | tech_badpromoters | * | 99.3671 | 100.0000 | 98.7421 | 47.8689 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
ckim-dragen | INDEL | D6_15 | HG002complexvar | hetalt | 93.7506 | 91.2142 | 96.4321 | 47.8822 | 924 | 89 | 973 | 36 | 36 | 100.0000 | |
cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4642 | 99.1114 | 99.8195 | 47.8833 | 1673 | 15 | 1659 | 3 | 3 | 100.0000 | |
raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4015 | 97.2145 | 74.5726 | 47.8842 | 349 | 10 | 349 | 119 | 117 | 98.3193 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.4542 | 96.4142 | 36.9777 | 47.8842 | 2635 | 98 | 2655 | 4525 | 4487 | 99.1602 | |
hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 |