PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 513 514 515 516 517 518 519 520 521 ... 1720 1721 » 25801-25850 / 86044 show all
ltrigg-rtg1	SNP	ti	tech_badpromoters	*	98.8372	100.0000	97.7011	45.6250	85	0	85	2	0	0.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.2816	94.8346	99.8583	45.6289	6334	345	6341	9	7	77.7778
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	95.2283	99.5561	91.2611	45.6295	2467	11	2475	237	8	3.3755
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	48.9297	42.6581	57.3634	45.6299	6307	8478	6466	4806	3764	78.3188
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.6410	211	0	211	1	0	0.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6381	99.8312	97.4731	45.6429	2366	4	2353	61	61	100.0000
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.2989	98.9290	99.6716	45.6458	4249	46	4249	14	0	0.0000
gduggal-bwafb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	79.7506	68.0178	96.3749	45.6511	2601	1223	1090	41	40	97.5610
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9195	98.2099	99.6395	45.6518	3621	66	3593	13	7	53.8462
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2771	98.9642	99.5919	45.6545	11752	123	11714	48	17	35.4167
jli-custom	SNP	*	HG002compoundhet	het	99.6122	99.6614	99.5631	45.6634	14130	48	14128	62	24	38.7097
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	77.9859	92.7577	67.2727	45.6641	333	26	333	162	160	98.7654
mlin-fermikit	SNP	*	map_siren	homalt	84.4526	80.6077	88.6825	45.6664	44460	10696	44453	5673	5485	96.6861
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.9139	99.9016	99.9262	45.6684	4061	4	4061	3	1	33.3333
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	97.5038	96.4789	98.5507	45.6693	137	5	136	2	1	50.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	97.5038	96.4789	98.5507	45.6693	137	5	136	2	1	50.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	96.5828	95.1281	98.0826	45.6725	5643	289	7622	149	142	95.3020
ndellapenna-hhga	SNP	ti	tech_badpromoters	het	100.0000	100.0000	100.0000	45.6790	44	0	44	0	0
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8486	89.4412	98.7128	45.6849	2465	291	2454	32	30	93.7500
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	15.5475	9.5361	42.0635	45.6897	37	351	53	73	43	58.9041
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	19.5313	12.1359	50.0000	45.6954	25	181	41	41	38	92.6829
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	98.2548	98.6087	97.9035	45.6956	3402	48	3409	73	33	45.2055
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	98.1282	96.9069	99.3807	45.7062	10151	324	10430	65	64	98.4615
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2183	99.7479	98.6942	45.7109	6727	17	6727	89	2	2.2472
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	85.6343	78.9796	93.5135	45.7111	387	103	2249	156	148	94.8718
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.6696	99.8938	97.4750	45.7112	10346	11	10346	268	263	98.1343
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.3724	98.7526	100.0000	45.7143	475	6	475	0	0
hfeng-pmm3	INDEL	D1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	45.7143	19	0	19	0	0
egarrison-hhga	INDEL	D1_5	tech_badpromoters	*	94.7368	94.7368	94.7368	45.7143	18	1	18	1	1	100.0000
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.0963	99.8550	96.3986	45.7203	2754	4	2757	103	70	67.9612
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	86.2075	77.4105	97.2603	45.7249	281	82	284	8	8	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.9813	98.1884	99.7871	45.7254	6558	121	6563	14	11	78.5714
bgallagher-sentieon	SNP	*	HG002compoundhet	het	99.7460	99.7320	99.7601	45.7386	14140	38	14138	34	11	32.3529
qzeng-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	77.7525	64.8746	97.0093	45.7404	181	98	519	16	13	81.2500
gduggal-bwavard	SNP	*	HG002compoundhet	*	84.7137	82.2128	87.3715	45.7405	21229	4593	20991	3034	2565	84.5419
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	30.5882	23.0769	45.3488	45.7413	39	130	78	94	74	78.7234
gduggal-bwaplat	INDEL	D16_PLUS	HG002compoundhet	*	77.8953	64.5023	98.3073	45.7436	1510	831	1510	26	25	96.1538
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	93.9002	90.2088	97.9065	45.7445	3326	361	3414	73	65	89.0411
asubramanian-gatk	SNP	tv	*	hetalt	95.7533	94.4891	97.0519	45.7454	823	48	823	25	2	8.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	57.0126	39.9235	99.6805	45.7539	313	471	312	1	1	100.0000
asubramanian-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.5017	91.3907	100.0000	45.7576	138	13	179	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	45.7608	1465	1	1465	0	0
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5931	99.3054	99.8825	45.7630	3431	24	3401	4	4	100.0000
eyeh-varpipe	INDEL	I16_PLUS	HG002complexvar	*	52.3530	38.8846	80.0955	45.7686	509	800	503	125	124	99.2000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	91.7464	96.2737	87.6259	45.7712	3152	122	8703	1229	548	44.5891
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0520	99.8745	98.2429	45.7715	10344	13	10344	185	181	97.8378
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	88.6540	89.8499	87.4895	45.7726	8498	960	9343	1336	702	52.5449
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.7127	54.1731	83.4992	45.7734	1058	895	1007	199	131	65.8291
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	94.0695	89.1473	99.5671	45.7746	230	28	230	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge