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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
25701-25750 / 86044 show all
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
71.3041
72.8754
69.7991
45.2762
809530131062945993296
71.6678
anovak-vgINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
39.2875
29.5634
58.5440
45.2777
15713743308021811823
83.5855
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
45.2787
481048100
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
92.3938
89.4378
95.5519
45.2869
12329145613383623612
98.2343
anovak-vgINDELI6_15HG002complexvar*
48.0486
41.4858
57.0779
45.2877
19882804200815101270
84.1060
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
94.0508
90.1716
98.2788
45.2919
578635711010
100.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.5573
95.0633
84.6541
45.2951
3678191105861919912
47.5248
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.7920
99.4303
96.2068
45.3054
102985910906430320
74.4186
eyeh-varpipeSNPtvHG002compoundhet*
97.1567
99.0474
95.3368
45.3099
883885717635178
22.2222
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5864
98.0186
99.1607
45.3115
8411782774
57.1429
anovak-vgSNPtitech_badpromotershet
83.5443
75.0000
94.2857
45.3125
33113322
100.0000
ckim-dragenSNPtvtech_badpromoters*
97.1831
95.8333
98.5714
45.3125
6936911
100.0000
jlack-gatkINDELI16_PLUSHG002compoundhethetalt
93.0151
87.1476
99.7297
45.3148
1824269184554
80.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
44.0002
28.5292
96.1301
45.3174
2029508323359492
97.8723
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
90.6327
87.6737
93.7984
45.3197
145120414529690
93.7500
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8606
97.3459
98.3807
45.3197
432811812333203185
91.1330
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
60.0653
42.9847
99.6711
45.3237
33744730311
100.0000
eyeh-varpipeINDELD16_PLUSHG002complexvarhomalt
44.7304
49.8270
40.5797
45.3249
144145140205205
100.0000
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
90.4018
83.1551
99.0323
45.3263
3116330733
100.0000
jpowers-varprowlINDEL**homalt
92.2554
87.3566
97.7363
45.3284
1093461582610923325302235
88.3399
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.8013
97.5893
98.0142
45.3295
92302289230187180
96.2567
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8959
99.7921
100.0000
45.3303
480148000
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
73.8957
69.0940
79.4146
45.3333
816365814211209
99.0521
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
60.7128
46.4157
87.7382
45.3351
439050684236592317
53.5473
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
45.3409
481048100
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2828
99.0685
99.4980
45.3418
4573434559232
8.6957
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
96.0289
93.6620
98.5185
45.3441
133913322
100.0000
gduggal-bwavardINDELD1_5func_cdshet
94.9721
100.0000
90.4255
45.3488
8508597
77.7778
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
58.3543
41.3584
99.0640
45.3538
68296763566
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
45.3608
211021110
0.0000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50het
79.4844
92.6189
69.6125
45.3619
3388270339514821473
99.3927
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.7733
97.4942
98.0540
45.3637
92212379221183179
97.8142
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.1282
97.8892
92.5187
45.3678
37183713024
80.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.6887
53.0607
60.8492
45.3700
11806104441261181146224
76.7069
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8625
98.1712
99.5636
45.3709
821315382133634
94.4444
anovak-vgINDELD6_15*het
76.4820
81.7202
71.8750
45.3746
947321191152345093518
78.0217
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3054
99.0537
99.5584
45.3803
2931282931130
0.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.1048
98.5238
99.6927
45.3838
3604543568112
18.1818
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.1110
97.3601
98.8735
45.3846
3562696645291516450
87.2093
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
84.1619
82.2267
86.1905
45.3886
77771681778312471228
98.4763
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
73.7279
98.8858
58.7748
45.3888
3554355249247
99.1968
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.1381
99.6239
98.6571
45.3917
1139043113871551
0.6452
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9317
99.8636
100.0000
45.3935
14642146400
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6399
99.2823
100.0000
45.3947
415341500
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.6078
97.2827
97.9351
45.4096
92012579201194187
96.3918
gduggal-bwafbINDELD6_15*het
96.0906
93.5300
98.7954
45.4106
1084275017633215165
76.7442
ltrigg-rtg2INDELI1_5HG002complexvarhomalt
99.5439
99.1894
99.9010
45.4107
1333810913119138
61.5385
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50*
94.4932
92.6377
96.4246
45.4241
3389826943775614001310
93.5714
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0372
96.1312
97.9605
45.4439
1421357215466322303
94.0994
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
96.9438
95.5133
98.4177
45.4467
12565912442012
60.0000