PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
25551-25600 / 86044 show all
ckim-gatkSNPtitech_badpromoters*
98.8235
98.8235
98.8235
44.8052
8418411
100.0000
ckim-vqsrSNPtitech_badpromoters*
98.8235
98.8235
98.8235
44.8052
8418411
100.0000
ckim-vqsrINDELI16_PLUSHG002compoundhethetalt
95.7976
92.0210
99.8974
44.8061
1926167194822
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8398
99.6802
100.0000
44.8107
405213405200
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.7988
86.5556
89.0781
44.8149
1782727691862022831417
62.0675
ckim-dragenINDELD1_5func_cds*
98.1481
100.0000
96.3636
44.8161
159015960
0.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_11to50het
78.7482
91.5528
69.0859
44.8186
3349309597826752192
81.9439
raldana-dualsentieonINDELI16_PLUSHG002compoundhethetalt
94.2662
89.1543
100.0000
44.8215
1866227188600
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
36.8196
27.4987
55.6992
44.8224
5421429185214731170
79.4297
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
36.8196
27.4987
55.6992
44.8224
5421429185214731170
79.4297
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
95.2832
91.6502
99.2161
44.8245
556550755694430
68.1818
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
cchapple-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.8454
79.2480
91.2936
44.8269
16654362590247237
95.9514
asubramanian-gatkINDELC16_PLUSHG002compoundhethet
0.0000
0.0000
44.8276
000160
0.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
88.8889
80.0000
100.0000
44.8276
1641600
qzeng-customINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
44.8276
1901600
ciseli-customINDELD16_PLUSHG002compoundhethet
17.8807
11.8519
36.3934
44.8463
48357111194186
95.8763
ltrigg-rtg1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8066
99.6337
99.9801
44.8476
10065371006021
50.0000
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
82.2286
71.0963
97.4943
44.8492
4281744281110
90.9091
hfeng-pmm2SNP*tech_badpromotershet
98.6842
97.4026
100.0000
44.8529
7527500
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
82.7974
80.3556
85.3922
44.8533
949232947162161
99.3827
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
52.7742
65.9483
43.9872
44.8571
3061588231048780
74.4275
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
44.0541
41.4041
47.0666
44.8610
39165542393944303649
82.3702
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
52.3244
38.4502
81.8636
44.8624
1047167649210968
62.3853
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
93.0590
87.7946
98.9950
44.8626
145320223642416
66.6667
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_triTR_11to50*
90.8156
88.7866
92.9396
44.8670
59787556279477242
50.7338
gduggal-snapfbSNP*HG002compoundhethomalt
96.1466
99.1282
93.3392
44.8696
106889410692763275
36.0419
raldana-dualsentieonINDELD1_5func_cdshet
100.0000
100.0000
100.0000
44.8718
8508600
mlin-fermikitSNP*tech_badpromotershomalt
95.1807
98.7500
91.8605
44.8718
7917976
85.7143
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
98.8764
97.7778
100.0000
44.8718
4414300
ckim-isaacINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
87.5378
78.4574
98.9950
44.8753
59016259165
83.3333
jpowers-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5482
99.9091
99.1899
44.8772
2199222041812
66.6667
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
75.5534
70.8134
80.9735
44.8780
2961221834343
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.8341
99.7463
97.9383
44.8790
1140429114012403
1.2500
ndellapenna-hhgaINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
94.5857
90.9615
98.5106
44.8835
283828228444339
90.6977
ltrigg-rtg1SNPtvHG002compoundhet*
98.9891
98.2741
99.7146
44.8855
87691548736255
20.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7907
99.6802
99.9014
44.8913
405213405241
25.0000
ckim-isaacINDELD6_15*het
91.7291
91.4941
91.9653
44.9050
1060698610084881656
74.4608
astatham-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
44.9080
444144631
33.3333
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
47.4332
31.5939
95.1220
44.9136
1114241210925643
76.7857
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
47.4332
31.5939
95.1220
44.9136
1114241210925643
76.7857
gduggal-snapvardSNP*tech_badpromotershomalt
90.4110
82.5000
100.0000
44.9153
66146500
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.9858
99.8938
98.0942
44.9243
103461110346201197
98.0100
ckim-isaacINDELD6_15HG002compoundhethet
43.7639
83.8785
29.6053
44.9275
718138270642608
94.7040
jli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.5415
89.8113
99.7976
44.9275
4765449311
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
74.7966
60.2857
98.5075
44.9315
21113919832
66.6667
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5382
99.2871
99.7905
44.9407
6685486668144
28.5714
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50het
95.3000
98.0590
92.6920
44.9432
3587713729294269
91.4966
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.4728
78.5200
62.2951
44.9448
3491955733444393996
90.0203
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2004
94.5833
99.9665
44.9492
2951169298011
100.0000