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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 498 499 500 501 502 503 504 505 506 ... 1720 1721 » 25051-25100 / 86044 show all
hfeng-pmm1	SNP	*	HG002compoundhet	het	96.0618	92.4743	99.9390	43.1383	13111	1067	13110	8	4	50.0000
anovak-vg	SNP	tv	HG002compoundhet	homalt	77.3553	84.3861	71.4060	43.1411	2859	529	2717	1088	616	56.6176
gduggal-bwaplat	SNP	ti	HG002complexvar	hetalt	89.7041	82.1256	98.8235	43.1438	170	37	168	2	2	100.0000
mlin-fermikit	INDEL	D6_15	HG002compoundhet	het	44.7280	80.2570	31.0032	43.1484	687	169	683	1520	1507	99.1447
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5539	93.3636	99.9700	43.1520	3292	234	3332	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5539	93.3636	99.9700	43.1520	3292	234	3332	1	1	100.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	92.6662	86.5889	99.6610	43.1599	297	46	294	1	1	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.6856	95.4758	100.0000	43.1608	612	29	615	0	0
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	98.7867	98.9531	98.6209	43.1645	7278	77	7294	102	43	42.1569
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.9006	95.8874	100.0000	43.1730	443	19	437	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	54.7241	37.7119	99.6997	43.1741	356	588	332	1	1	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	89.9895	86.0506	94.3064	43.1744	15206	2465	15106	912	765	83.8816
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	89.9895	86.0506	94.3064	43.1744	15206	2465	15106	912	765	83.8816
hfeng-pmm3	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	43.1818	75	2	75	0	0
egarrison-hhga	SNP	tv	HG002compoundhet	homalt	99.1596	99.2326	99.0866	43.1871	3362	26	3363	31	28	90.3226
rpoplin-dv42	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	89.1786	80.8250	99.4580	43.1871	725	172	734	4	4	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.3578	97.1724	99.5724	43.1938	10791	314	10945	47	46	97.8723
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7607	99.5225	100.0000	43.1975	1459	7	1478	0	0
gduggal-snapfb	INDEL	I6_15	HG002complexvar	*	72.9303	63.6686	85.3453	43.1989	3051	1741	3040	522	491	94.0613
ckim-dragen	SNP	tv	HG002compoundhet	homalt	99.8672	99.8819	99.8524	43.2020	3384	4	3383	5	5	100.0000
eyeh-varpipe	INDEL	D16_PLUS	*	homalt	49.8532	50.8274	48.9155	43.2091	860	832	857	895	865	96.6480
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	97.8571	96.4789	99.2754	43.2099	137	5	137	1	1	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0808	92.8872	99.5018	43.2116	12785	979	12981	65	64	98.4615
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	96.6308	99.6416	93.7966	43.2141	3892	14	3901	258	11	4.2636
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2955	97.2036	99.4122	43.2207	2607	75	2706	16	10	62.5000
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.0605	98.2598	99.8745	43.2288	1581	28	1591	2	2	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4541	99.1074	99.8032	43.2339	11769	106	11664	23	18	78.2609
ckim-isaac	SNP	*	HG002compoundhet	het	87.1652	78.2691	98.3428	43.2349	11097	3081	11631	196	36	18.3673
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.1862	76.5690	98.5663	43.2350	549	168	550	8	5	62.5000
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3938	98.9601	99.8314	43.2370	8279	87	8291	14	13	92.8571
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	69.0093	82.0142	59.5643	43.2407	10269	2252	28735	19507	17809	91.2954
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	83.4019	71.9604	99.1696	43.2419	3344	1303	3344	28	26	92.8571
jpowers-varprowl	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	43.2432	41	0	41	1	1	100.0000
ckim-dragen	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	43.2432	41	0	41	1	1	100.0000
hfeng-pmm3	SNP	ti	tech_badpromoters	*	99.4083	98.8235	100.0000	43.2432	84	1	84	0	0
hfeng-pmm2	SNP	ti	tech_badpromoters	homalt	98.7952	100.0000	97.6190	43.2432	41	0	41	1	1	100.0000
hfeng-pmm1	SNP	ti	tech_badpromoters	*	99.4083	98.8235	100.0000	43.2432	84	1	84	0	0
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.4613	99.2277	99.6960	43.2493	6681	52	7543	23	17	73.9130
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	72.9057	90.7801	60.9122	43.2513	512	52	1616	1037	988	95.2748
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3899	96.9496	99.8736	43.2587	3941	124	3951	5	2	40.0000
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.4961	97.7763	99.2266	43.2593	20138	458	20142	157	149	94.9045
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3835	94.9801	99.9116	43.2609	3349	177	3390	3	3	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3835	94.9801	99.9116	43.2609	3349	177	3390	3	3	100.0000
ghariani-varprowl	INDEL	I6_15	*	homalt	79.0493	68.3603	93.7006	43.2628	4265	1974	4269	287	252	87.8049
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5867	99.2941	99.8810	43.2816	844	6	839	1	0	0.0000
jli-custom	SNP	tv	HG002compoundhet	homalt	99.8081	99.7934	99.8228	43.2831	3381	7	3380	6	4	66.6667
qzeng-custom	INDEL	I6_15	*	homalt	92.4648	97.8362	87.6525	43.2864	6104	135	6105	860	457	53.1395
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	42.7693	45.3355	40.4781	43.2897	277	334	508	747	649	86.8809
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	23.1444	17.6107	33.7493	43.2911	370	1731	649	1274	1040	81.6327
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	19.0690	11.4688	56.5315	43.2950	57	440	251	193	191	98.9637

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