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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 497 498 499 500 501 502 503 504 505 ... 1720 1721 » 25001-25050 / 86044 show all
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	85.7143	75.0000	100.0000	42.9844	246	82	256	0	0
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	73.0691	85.1079	64.0141	42.9883	13413	2347	35693	20065	18085	90.1321
gduggal-snapvard	INDEL	D1_5	HG002complexvar	homalt	91.8287	87.2523	96.9117	42.9901	9247	1351	9320	297	279	93.9394
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	10.6916	5.9524	52.4590	42.9907	10	158	32	29	10	34.4828
ndellapenna-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.0865	90.1750	98.3527	42.9913	1597	174	1612	27	24	88.8889
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	het	90.9225	84.6154	98.2456	43.0000	11	2	56	1	0	0.0000
ghariani-varprowl	INDEL	I6_15	HG002compoundhet	*	2.8447	2.1650	4.1467	43.0029	190	8586	190	4392	4347	98.9754
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	72.9624	58.1711	97.8403	43.0063	1584	1139	1495	33	31	93.9394
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.6929	96.8651	88.8653	43.0098	4604	149	4597	576	566	98.2639
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.8469	95.1945	98.5577	43.0137	416	21	410	6	6	100.0000
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9318	99.9318	99.9318	43.0237	1465	1	1465	1	1	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	83.6479	73.1252	97.7082	43.0315	5246	1928	5244	123	121	98.3740
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	85.1332	74.3655	99.5470	43.0323	879	303	879	4	4	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	95.2032	91.8723	98.7848	43.0326	2532	224	2520	31	30	96.7742
qzeng-custom	INDEL	D6_15	HG002compoundhet	homalt	15.8393	95.8333	8.6331	43.0328	23	1	24	254	199	78.3465
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	96.7509	94.3662	99.2593	43.0380	134	8	134	1	1	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6029	99.2089	100.0000	43.0390	3637	29	3625	0	0
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
gduggal-bwavard	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.7481	97.6242	99.8981	43.0461	9862	240	9806	10	9	90.0000
ghariani-varprowl	SNP	tv	func_cds	het	99.0291	99.8118	98.2586	43.0471	2652	5	2652	47	0	0.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.2350	94.7249	99.8818	43.0518	3340	186	3381	4	4	100.0000
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.2350	94.7249	99.8818	43.0518	3340	186	3381	4	4	100.0000
mlin-fermikit	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	80.7772	68.1698	99.1060	43.0545	771	360	776	7	7	100.0000
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.4513	96.2447	92.7236	43.0556	2281	89	2281	179	171	95.5307
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	75.5916	74.7677	76.4339	43.0667	1609	543	1839	567	503	88.7125
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.7013	98.9583	98.4456	43.0678	190	2	190	3	2	66.6667
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.9093	94.7026	99.2213	43.0691	6543	366	6626	52	48	92.3077
anovak-vg	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	57.1106	50.0879	66.4235	43.0727	2563	2554	2732	1381	1057	76.5387
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7273	99.6820	99.7726	43.0753	2194	7	2194	5	4	80.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	81.1268	69.5652	97.2973	43.0769	32	14	36	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.0793	1464	2	1464	0	0
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	95.1371	99.6801	90.9901	43.0795	4674	15	4393	435	14	3.2184
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7625	99.5261	100.0000	43.0894	210	1	210	0	0
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	95.1686	91.6276	98.9943	43.0908	1368	125	689	7	7	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.1107	96.2703	97.9659	43.0945	17578	681	17579	365	348	95.3425
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	93.4534	92.3513	94.5822	43.0987	9611	796	14228	815	315	38.6503
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1461	99.8517	98.4503	43.0996	6734	10	6734	106	1	0.9434
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.1014	1464	2	1464	0	0
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.3347	96.7239	100.0000	43.1050	620	21	623	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	43.1128	1462	4	1462	0	0
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.2211	97.0040	99.4690	43.1148	13372	413	13301	71	68	95.7746
gduggal-snapplat	INDEL	I6_15	HG002compoundhet	*	49.4889	36.1782	78.2955	43.1184	3175	5601	3142	871	568	65.2124
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7607	99.5225	100.0000	43.1189	1459	7	1459	0	0
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	30.7692	61.9718	20.4651	43.1217	44	27	44	171	145	84.7953
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.5565	95.7135	99.4720	43.1314	13174	590	13375	71	70	98.5915
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.7189	99.8474	97.6155	43.1356	1309	2	1310	32	0	0.0000
jpowers-varprowl	SNP	*	HG002compoundhet	homalt	89.3414	99.8238	80.8512	43.1364	10763	19	10771	2551	2008	78.7142
gduggal-bwafb	INDEL	D1_5	func_cds	het	98.8372	100.0000	97.7011	43.1373	85	0	85	2	1	50.0000

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