PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 494 495 496 497 498 499 500 501 502 ... 1720 1721 » 24851-24900 / 86044 show all
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.5686	97.2591	99.9139	42.5606	1100	31	1161	1	0	0.0000
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	31.5161	18.7373	99.1071	42.5641	92	399	111	1	1	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8134	99.7514	99.8755	42.5661	1605	4	1605	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7177	99.6321	99.8035	42.5670	4062	15	4064	8	5	62.5000
ckim-dragen	SNP	ti	tech_badpromoters	*	98.8235	98.8235	98.8235	42.5676	84	1	84	1	1	100.0000
ckim-isaac	INDEL	D1_5	func_cds	het	100.0000	100.0000	100.0000	42.5676	85	0	85	0	0
gduggal-snapplat	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.3969	79.4375	99.6342	42.5683	2175	563	2179	8	4	50.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0629	98.1432	100.0000	42.5707	1110	21	1117	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.5727	1125	3	1125	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	82.8938	71.8447	97.9592	42.5781	148	58	144	3	2	66.6667
mlin-fermikit	SNP	*	HG002compoundhet	*	92.7673	91.9758	93.5725	42.5829	23750	2072	23759	1632	1332	81.6176
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	26.2530	22.2973	31.9149	42.5829	33	115	105	224	205	91.5179
dgrover-gatk	INDEL	I1_5	func_cds	het	98.3607	100.0000	96.7742	42.5926	59	0	60	2	0	0.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.7868	96.4686	99.1416	42.5996	9124	334	9124	79	75	94.9367
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	98.2808	99.8350	96.7742	42.6049	18153	30	18150	605	8	1.3223
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5714	93.4487	99.9101	42.6066	3295	231	3335	3	3	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.5714	93.4487	99.9101	42.6066	3295	231	3335	3	3	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	96.7357	95.1299	98.3966	42.6150	1172	60	1166	19	9	47.3684
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3358	98.7667	99.9115	42.6185	11292	141	11289	10	2	20.0000
ghariani-varprowl	SNP	*	HG002compoundhet	homalt	89.8311	99.8331	81.6508	42.6198	10764	18	10773	2421	2004	82.7757
eyeh-varpipe	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	60.4796	98.4043	43.6551	42.6260	740	12	805	1039	978	94.1290
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.8721	97.9866	99.7738	42.6347	2628	54	2646	6	6	100.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	50.2734	33.9647	96.7108	42.6363	1847	3591	2117	72	72	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	42.6441	858	0	846	0	0
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	98.5033	98.1180	98.8917	42.6441	9280	178	9280	104	101	97.1154
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	84.0909	72.5490	100.0000	42.6471	37	14	39	0	0
rpoplin-dv42	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.4711	89.8077	99.6454	42.6596	2802	318	2810	10	9	90.0000
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5998	99.2908	99.9108	42.6598	1120	8	1120	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0240	99.1401	98.9082	42.6607	5073	44	5073	56	56	100.0000
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	93.4462	95.8525	91.1578	42.6611	1872	81	1866	181	162	89.5028
anovak-vg	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	83.7423	78.1955	90.1361	42.6621	1040	290	1060	116	85	73.2759
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	94.9292	96.3368	93.5621	42.6632	3524	134	3517	242	235	97.1074
jlack-gatk	INDEL	I6_15	func_cds	*	97.6744	97.6744	97.6744	42.6667	42	1	42	1	1	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	98.7814	98.0085	99.5665	42.6678	689	14	689	3	2	66.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.5311	96.0668	99.0408	42.6732	9086	372	9086	88	81	92.0455
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	97.8546	96.4789	99.2701	42.6778	137	5	136	1	1	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	98.7188	97.6759	99.7842	42.6822	4539	108	4623	10	10	100.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.8637	100.0000	42.6858	2198	3	2198	0	0
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	65.2231	63.7325	66.7851	42.6875	23321	13271	40773	20278	18291	90.2012
dgrover-gatk	SNP	tv	HG002compoundhet	homalt	99.8671	99.9115	99.8228	42.6879	3385	3	3380	6	5	83.3333
qzeng-custom	SNP	ti	HG002compoundhet	het	98.0838	97.7380	98.4320	42.6883	9290	215	11739	187	45	24.0642
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	93.1476	87.5576	99.5000	42.6934	190	27	199	1	1	100.0000
raldana-dualsentieon	SNP	tv	HG002compoundhet	homalt	99.8228	99.7344	99.9113	42.6999	3379	9	3380	3	2	66.6667
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7221	99.9521	99.4931	42.7028	6265	3	6281	32	9	28.1250
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	80.7660	81.6777	79.8745	42.7070	3330	747	3310	834	461	55.2758
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.7955	92.0590	99.8481	42.7080	3246	280	3287	5	4	80.0000
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.7955	92.0590	99.8481	42.7080	3246	280	3287	5	4	80.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2727	83.9465	100.0000	42.7114	753	144	786	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge