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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
24301-24350 / 86044 show all
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
89.9396
84.3248
96.3555
40.6305
582610835843221166
75.1131
astatham-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.3282
91.7949
99.1445
40.6321
89580104399
100.0000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6310
99.3377
99.9260
40.6323
405027405330
0.0000
jpowers-varprowlINDEL*func_cds*
91.7808
90.3371
93.2715
40.6336
402434022928
96.5517
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.6546
90.5641
99.1321
40.6411
88392102899
100.0000
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.1790
86.6893
98.4109
40.6421
331550935305749
85.9649
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.7691
94.9258
98.6854
40.6471
563130156307556
74.6667
ckim-vqsrSNPtiHG002compoundhethet
99.2006
98.5692
99.8402
40.6564
936913693691513
86.6667
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.2212
95.8530
98.6289
40.6591
568624656837958
73.4177
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_51to200*
24.7859
22.4655
27.6409
40.6626
472162950513221216
91.9818
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
80.7906
68.5669
98.3181
40.6653
2622120228064841
85.4167
astatham-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0710
94.4664
99.8233
40.6709
167398169533
100.0000
eyeh-varpipeINDELI16_PLUSHG002compoundhethetalt
18.8882
10.4634
96.9432
40.6736
219187422277
100.0000
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
50.4202
43.4783
60.0000
40.6780
2026211413
92.8571
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.9137
52.6535
45.6699
40.6819
506455117613991152
82.3445
hfeng-pmm3INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.2919
89.4359
99.7056
40.6868
872103101633
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
76.3850
99.7475
61.8895
40.6948
474112482829732967
99.7982
ckim-vqsrSNP*HG002complexvarhetalt
96.6667
93.5484
100.0000
40.6953
2902029000
ckim-vqsrSNPtvHG002complexvarhetalt
96.6667
93.5484
100.0000
40.6953
2902029000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
82.4914
70.8428
98.7245
40.6959
31112838754
80.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3002
99.9010
98.7065
40.6968
1816518181622384
1.6807
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2455
99.2320
99.2591
40.7060
38763038852910
34.4828
hfeng-pmm1INDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.5197
89.8462
99.7062
40.7085
87699101833
100.0000
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.0202
94.4334
91.6486
40.7109
89915301186310811022
94.5421
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
92.7348
88.8325
96.9957
40.7125
105013222677
100.0000
mlin-fermikitSNPtitech_badpromoters*
94.0476
92.9412
95.1807
40.7143
7967944
100.0000
rpoplin-dv42SNP*HG002compoundhet*
99.6493
99.5895
99.7091
40.7188
25716106257077561
81.3333
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.4946
92.1026
99.1461
40.7199
89877104599
100.0000
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
59.8171
57.4468
62.3913
40.7216
10880287173145
83.8150
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.1732
97.9957
70.7498
40.7293
7236148762431523088
97.9695
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.1968
99.5561
98.8400
40.7302
2467112471296
20.6897
gduggal-bwafbINDELI6_15HG002compoundhethetalt
82.7582
72.8242
95.8306
40.7336
6217232014716463
98.4375
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
94.9720
92.0000
98.1424
40.7339
3222831766
100.0000
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.8883
93.1278
98.8175
40.7349
15557114816463197178
90.3553
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8883
93.1278
98.8175
40.7349
15557114816463197178
90.3553
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0972
99.7896
96.4613
40.7376
4743104743174174
100.0000
jlack-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
jli-customINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
hfeng-pmm1SNPtvtech_badpromotershet
98.4615
96.9697
100.0000
40.7407
3213200
astatham-gatkINDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000
astatham-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
bgallagher-sentieonINDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000
bgallagher-sentieonINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
dgrover-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
ckim-vqsrINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
rpoplin-dv42INDELD1_5func_cds*
100.0000
100.0000
100.0000
40.7407
159016000
ckim-dragenINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
ckim-gatkINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
84.3152
93.7856
76.5821
40.7415
21431422142655651
99.3893