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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
24251-24300 / 86044 show all
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
64.3918
47.8099
98.5834
40.4750
3853420634104942
85.7143
jmaeng-gatkSNPtiHG002complexvarhetalt
97.2973
95.6522
99.0000
40.4762
198919822
100.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.7671
95.6318
100.0000
40.4831
6132861600
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6427
96.1360
99.1974
40.4967
12445012361010
100.0000
asubramanian-gatkSNPtiHG002complexvarhetalt
94.4724
90.8213
98.4293
40.4984
1881918830
0.0000
ltrigg-rtg2SNP**hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
ltrigg-rtg2SNPtv*hetalt
99.2565
99.5408
98.9738
40.5020
867486899
100.0000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
43.1800
56.8831
34.7973
40.5025
219166412772591
76.5544
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
64.5823
60.5420
69.2004
40.5056
1485796831473965606397
97.5152
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.1791
87.3169
99.8851
40.5059
3339485347744
100.0000
gduggal-bwavardSNPtilowcmp_SimpleRepeat_triTR_11to50*
98.7388
98.3871
99.0930
40.5118
3843633824356
17.1429
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
63.9370
50.2304
87.9310
40.5128
1091081021410
71.4286
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6745
99.8597
99.4900
40.5130
213532146114
36.3636
jmaeng-gatkSNP*HG002complexvarhetalt
97.8723
96.4516
99.3355
40.5138
2991129922
100.0000
jmaeng-gatkSNPtvHG002complexvarhetalt
97.8723
96.4516
99.3355
40.5138
2991129922
100.0000
ckim-gatkSNPtiHG002compoundhethet
99.4351
99.0847
99.7881
40.5181
94188794182015
75.0000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6856
95.4758
100.0000
40.5222
6122961500
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6557
99.3868
99.9261
40.5247
405225405530
0.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7733
99.9091
99.6378
40.5384
21992220184
50.0000
ltrigg-rtg1SNP**hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
ltrigg-rtg1SNPtv*hetalt
99.2007
99.6556
98.7500
40.5405
86838691111
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
40.5454
13300133000
gduggal-snapfbINDELD6_15HG002compoundhethetalt
76.8495
65.2926
93.3775
40.5512
532228298466059
98.3333
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
77.9762
81.6286
74.6367
40.5656
3328749431414661261
86.0164
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.0280
94.8346
99.3253
40.5686
6334345114827847
60.2564
gduggal-bwavardINDEL*HG002complexvarhomalt
95.0919
90.9942
99.5761
40.5691
2459324342395810266
64.7059
ckim-dragenINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.6558
90.5641
99.1346
40.5714
88392103199
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
37.9562
27.0833
63.4146
40.5797
52140523024
80.0000
ltrigg-rtg2SNPtvHG002compoundhethomalt
99.4361
98.9079
99.9699
40.5831
335137332111
100.0000
raldana-dualsentieonINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.7357
81.3824
100.0000
40.5910
73016776400
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.0045
99.8174
98.2047
40.5930
273352735503
6.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.1958
90.6831
95.8516
40.5987
20177207320125871757
86.9116
gduggal-snapfbINDELD1_5func_cds*
98.4227
98.1132
98.7342
40.6015
156315621
50.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
94.4069
93.3537
95.4842
40.6110
229091631240201136871
76.6725
jli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.8486
95.7878
100.0000
40.6160
6142761700
astatham-gatkSNPtv*hetalt
99.7699
99.5408
100.0000
40.6164
867486700
bgallagher-sentieonSNP**hetalt
99.7699
99.5408
100.0000
40.6164
867486700
bgallagher-sentieonSNPtv*hetalt
99.7699
99.5408
100.0000
40.6164
867486700
astatham-gatkSNP**hetalt
99.7699
99.5408
100.0000
40.6164
867486700
ltrigg-rtg1INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1940
95.0822
99.4017
40.6176
647733564803939
100.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0426
94.5944
99.6209
40.6185
15802903160296160
98.3607
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0426
94.5944
99.6209
40.6185
15802903160296160
98.3607
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.0250
86.0513
98.8900
40.6231
8391369801110
90.9091
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
79.6904
73.7069
86.7312
40.6237
3421221255192190
98.9583
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
75.8133
61.0478
100.0000
40.6250
2681711900
gduggal-bwafbINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
40.6250
1901900
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
44.5986
69.2308
32.8947
40.6250
94255146
90.1961
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2883
99.8050
98.7768
40.6294
460794603573
5.2632