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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
24201-24250 / 86044 show all
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.9409
75.3478
100.0000
40.3027
975319106500
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0056
80.5701
99.4139
40.3057
308174332231917
89.4737
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.0561
98.7981
99.3154
40.3094
40284940622817
60.7143
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5369
99.1334
99.9436
40.3106
10639931063961
16.6667
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2963
71.7737
88.5804
40.3166
989438911072013821368
98.9870
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
97.0354
97.2932
96.7790
40.3219
12943612924335
81.3953
ltrigg-rtg1INDELD6_15*hetalt
96.1547
93.1490
99.3609
40.3300
761456076184949
100.0000
jmaeng-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3579
94.8518
100.0000
40.3320
6083361100
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4728
95.2120
95.7351
40.3377
4872245487121788
40.5530
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
95.2238
96.6140
93.8731
40.3394
428154292827
96.4286
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
48.2628
55.3309
42.7960
40.3404
602486600802781
97.3815
rpoplin-dv42INDELI16_PLUSHG002compoundhethetalt
91.7314
84.8065
99.8878
40.3479
1775318178122
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
86.0739
75.9777
99.2647
40.3509
1364313511
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.3436
96.3164
90.5489
40.3596
71122726879718641
89.2758
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50het
98.5435
99.8700
97.2518
40.3648
4610643881249
7.2581
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
97.9485
99.8507
96.1175
40.3651
4682746791891
0.5291
ckim-vqsrSNPtiHG002complexvarhetalt
96.2406
92.7536
100.0000
40.3727
1921519200
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.3995
99.6241
99.1760
40.3752
1325513241111
100.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
57.3590
53.6994
61.5538
40.3800
929801927579570
98.4456
gduggal-bwafbSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.2945
99.0956
99.4942
40.3814
66846166883420
58.8235
gduggal-bwaplatSNP*HG002compoundhethomalt
95.7606
93.2573
98.4021
40.3893
100557279976162149
91.9753
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.6842
90.2604
99.5639
40.3949
150781627152986760
89.5522
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.6842
90.2604
99.5639
40.3949
150781627152986760
89.5522
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.4177
98.8728
97.9668
40.4008
73688473721533
1.9608
rpoplin-dv42INDELI1_5func_cdshet
99.1453
98.3051
100.0000
40.4040
5815900
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
cchapple-customINDELD1_5func_cdshet
99.4220
100.0000
98.8506
40.4110
8508610
0.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.8125
99.9061
99.7191
40.4113
744577455212
9.5238
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6487
95.5751
99.8142
40.4145
965544796701811
61.1111
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
87.8316
82.7461
93.5831
40.4184
1209525221790912281155
94.0554
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.4540
98.6270
88.7967
40.4203
43164285454
100.0000
rpoplin-dv42INDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
92.3921
86.0531
99.7392
40.4272
1524247153044
100.0000
ltrigg-rtg1SNPtvHG002compoundhethomalt
99.0027
98.2290
99.7886
40.4282
332860330471
14.2857
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1151
98.3983
99.8425
40.4315
823213482421312
92.3077
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.9728
99.5552
98.3972
40.4460
67143067531105
4.5455
gduggal-bwafbINDELI6_15**
87.8626
81.3399
95.5225
40.4474
20191463221206994970
97.5855
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
40.4484
13282132800
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
87.0799
77.3066
99.6819
40.4484
45581338188065
83.3333
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
87.0799
77.3066
99.6819
40.4484
45581338188065
83.3333
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
96.8085
94.7917
98.9130
40.4531
1821018221
50.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.3128
96.6816
100.0000
40.4561
259389261100
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
90.8245
87.6365
94.2532
40.4574
3321646863268719931737
87.1550
ciseli-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
91.7959
97.7681
86.5114
40.4602
337377338052726
4.9336
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9699
22.4138
55.7303
40.4682
104360496394328
83.2487
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
46.9955
42.3432
52.7964
40.4686
872111875866677487585
97.8962
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.8678
98.2992
99.4430
40.4688
10230177101775724
42.1053
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
37.1380
22.9618
97.0630
40.4691
583195613554141
100.0000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
64.3918
47.8099
98.5834
40.4750
3853420634104942
85.7143