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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
23951-24000 / 86044 show all
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.2655
94.7083
99.9646
39.5202
5584312564522
100.0000
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.2655
94.7083
99.9646
39.5202
5584312564522
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7426
92.6463
99.0529
39.5216
178914217781717
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7426
92.6463
99.0529
39.5216
178914217781717
100.0000
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
84.8287
79.2124
91.3021
39.5276
3681966175316781
48.5030
hfeng-pmm2SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
39.5280
205220500
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3074
94.9664
99.7667
39.5535
2547135256666
100.0000
ndellapenna-hhgaSNP*HG002compoundhet*
98.3720
97.8158
98.9346
39.5539
2525856425258272233
85.6618
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.3995
94.9309
100.0000
39.5543
2061121700
jlack-gatkSNP*HG002complexvarhetalt
99.0323
99.0323
99.0323
39.5712
307330733
100.0000
jlack-gatkSNPtvHG002complexvarhetalt
99.0323
99.0323
99.0323
39.5712
307330733
100.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.2842
83.8309
91.0342
39.5768
24994826681658602
91.4894
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.2492
99.3985
99.1004
39.5833
1322813221210
83.3333
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7965
99.5102
98.0929
39.5838
1137756114192226
2.7027
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6636
99.5017
99.8260
39.5847
459323458983
37.5000
jlack-gatkSNPtiHG002complexvarhetalt
98.7893
98.5507
99.0291
39.5894
204320422
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.1609
99.8464
98.4848
39.5973
1950319503030
100.0000
bgallagher-sentieonSNPtiHG002compoundhethet
99.8158
99.7685
99.8631
39.5979
9483229481136
46.1538
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1482
96.8620
93.4939
39.6090
10032325149021037946
91.2247
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.5386
99.2998
99.7786
39.6095
226916225351
20.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6967
99.7400
99.6534
39.6128
4604124600162
12.5000
ghariani-varprowlINDELD6_15HG002compoundhet*
10.6907
9.2349
12.6916
39.6150
834819782856965632
98.8764
raldana-dualsentieonSNP*HG002compoundhet*
97.7792
95.7401
99.9071
39.6169
247221100247222315
65.2174
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.7221
46.8234
57.7656
39.6200
1774720155247261807814175
78.4102
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
31.2083
26.2195
38.5417
39.6226
431217411898
83.0508
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.8905
99.9061
97.8953
39.6283
7445774421603
1.8750
ltrigg-rtg2INDELD16_PLUS*hetalt
95.7476
92.6539
99.0550
39.6309
179114217821717
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.5825
99.2217
99.9459
39.6327
739458739141
25.0000
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.8636
98.0031
99.7394
39.6351
191439191454
80.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1287
94.5229
99.8822
39.6374
167497169622
100.0000
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
45.5773
40.9756
51.3433
39.6396
84121172163161
98.7730
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
45.5773
40.9756
51.3433
39.6396
84121172163161
98.7730
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
66.7240
96.5130
50.9868
39.6443
9189332129431244212249
98.4488
gduggal-snapfbINDELI6_15*homalt
78.8948
72.1430
87.0410
39.6459
450117384480667645
96.7016
hfeng-pmm3SNP*HG002compoundhet*
97.8284
95.8679
99.8709
39.6499
247551067247553215
46.8750
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9093
97.5848
98.2359
39.6520
1781844117820320305
95.3125
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2779
98.6498
99.9141
39.6579
233832232622
100.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6384
95.7207
99.6345
39.6588
12755751801917
89.4737
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.8719
99.8294
99.9145
39.6596
46818467641
25.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.8687
99.8426
99.8949
39.6597
114151811408123
25.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.8665
99.8517
99.8813
39.6598
673410673282
25.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9920
92.6052
99.6360
39.6618
546043654752020
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
54.5918
37.8497
97.8929
39.6624
2584424328346158
95.0820
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2343
99.5392
98.9313
39.6684
1944919442120
95.2381
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1348
99.8900
98.3909
39.6771
1816320181602974
1.3468
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.1579
94.9718
95.3448
39.6821
38722053871189179
94.7090