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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 472 473 474 475 476 477 478 479 480 ... 1720 1721 » 23751-23800 / 86044 show all
gduggal-snapfb	INDEL	I6_15	HG002compoundhet	hetalt	70.7588	57.7252	91.3944	38.7805	4928	3609	1147	108	105	97.2222
dgrover-gatk	INDEL	I6_15	*	hetalt	96.6039	93.4744	99.9502	38.7907	7993	558	8034	4	4	100.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.1754	99.4737	98.8789	38.7923	1323	7	1323	15	13	86.6667
anovak-vg	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	96.8834	96.9671	96.7998	38.7932	4476	140	4507	149	76	51.0067
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8882	99.8789	99.8975	38.7986	10719	13	10717	11	5	45.4545
raldana-dualsentieon	INDEL	I6_15	func_cds	*	97.6190	95.3488	100.0000	38.8060	41	2	41	0	0
cchapple-custom	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	38.8060	41	0	41	0	0
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.8170	81.7294	42.3803	38.8099	586	131	584	794	776	97.7330
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	39.8487	25.0685	97.0961	38.8155	549	1641	1304	39	39	100.0000
gduggal-bwafb	INDEL	I16_PLUS	HG002complexvar	homalt	87.0748	82.8479	91.7563	38.8158	256	53	256	23	22	95.6522
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.4653	94.4068	92.5425	38.8281	6971	413	14221	1146	906	79.0576
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8289	94.4588	99.3210	38.8312	1824	107	2048	14	14	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.8289	94.4588	99.3210	38.8312	1824	107	2048	14	14	100.0000
ciseli-custom	INDEL	I6_15	*	homalt	49.3008	46.2895	52.7313	38.8345	2888	3351	2867	2570	2475	96.3035
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.5336	99.9532	99.1175	38.8352	2137	1	2134	19	2	10.5263
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	62.4312	62.4952	62.3673	38.8416	11411	6848	16160	9751	8900	91.2727
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4476	99.1594	99.7375	38.8443	3421	29	3420	9	2	22.2222
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	87.2533	88.7226	85.8319	38.8447	9189	1168	9178	1515	1403	92.6073
gduggal-snapfb	INDEL	*	HG002compoundhet	het	71.1390	60.5520	86.2126	38.8614	2479	1615	23405	3743	1778	47.5020
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4376	99.3474	99.5280	38.8679	2740	18	2741	13	13	100.0000
rpoplin-dv42	SNP	ti	HG002compoundhet	het	99.5469	99.3898	99.7044	38.8720	9447	58	9445	28	22	78.5714
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	69.5027	72.7855	66.5031	38.8732	11471	4289	21148	10652	8272	77.6568
astatham-gatk	INDEL	D16_PLUS	*	hetalt	96.8051	94.4128	99.3217	38.8807	1825	108	2050	14	14	100.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.0196	90.4177	61.2365	38.8818	6039	640	15303	9687	8838	91.2357
anovak-vg	INDEL	*	tech_badpromoters	het	55.6267	41.0256	86.3636	38.8889	16	23	19	3	3	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	90.9091	83.3333	100.0000	38.8889	10	2	11	0	0
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	90.9091	83.3333	100.0000	38.8889	10	2	11	0	0
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	90.9091	83.3333	100.0000	38.8889	10	2	11	0	0
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	91.0457	84.6445	98.4943	38.8914	2679	486	2682	41	28	68.2927
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	95.8927	93.7179	98.1709	38.9030	11129	746	11110	207	127	61.3527
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.2830	86.8621	93.9845	38.9075	10876	1645	16608	1063	1029	96.8015
qzeng-custom	SNP	tv	HG002complexvar	hetalt	97.3511	95.1613	99.6441	38.9130	295	15	280	1	1	100.0000
qzeng-custom	SNP	*	HG002complexvar	hetalt	97.3511	95.1613	99.6441	38.9130	295	15	280	1	1	100.0000
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	72.4268	57.1879	98.7375	38.9205	1452	1087	1486	19	19	100.0000
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.3145	96.7288	99.9531	38.9223	2129	72	2130	1	1	100.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2222	98.5461	99.9076	38.9281	2169	32	2163	2	2	100.0000
raldana-dualsentieon	INDEL	D1_5	func_cds	*	100.0000	100.0000	100.0000	38.9313	159	0	160	0	0
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.2758	93.3345	99.4086	38.9346	5503	393	6051	36	34	94.4444
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.2758	93.3345	99.4086	38.9346	5503	393	6051	36	34	94.4444
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.5102	97.4083	99.6374	38.9351	23904	636	23906	87	70	80.4598
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	81.5850	69.5556	98.6454	38.9545	1894	829	2039	28	23	82.1429
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.9531	94.2953	99.7651	38.9579	2529	153	2548	6	6	100.0000
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	38.9610	47	0	47	0	0
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6738	99.8792	97.4971	38.9618	7443	9	7440	191	3	1.5707
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8707	99.8790	99.8625	38.9762	18161	22	18154	25	8	32.0000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.4844	97.2451	91.8762	38.9766	6495	184	6322	559	498	89.0877
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	52.8467	36.1380	98.2938	38.9792	1456	2573	2362	41	37	90.2439
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.1564	96.8697	99.4778	38.9804	1145	37	1143	6	6	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.4672	97.2859	99.6775	38.9821	20037	559	20088	65	55	84.6154
gduggal-bwavard	SNP	ti	tech_badpromoters	homalt	93.5065	87.8049	100.0000	38.9831	36	5	36	0	0

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