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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
23701-23750 / 86044 show all
anovak-vgINDEL*func_cds*
81.4334
80.2247
82.6790
38.5816
357883587554
72.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.0231
94.1723
93.8743
38.5973
1519948260539525
97.4026
gduggal-bwafbINDEL*func_cds*
95.8862
94.1573
97.6798
38.6040
41926421108
80.0000
anovak-vgINDELI6_15**
44.4248
38.7222
52.0973
38.6048
961215211951487486474
74.0055
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
38.6097
13092130700
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0226
86.5506
98.2332
38.6117
54785556109
90.0000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.7416
67.9902
54.8896
38.6127
22261048375530862432
78.8075
hfeng-pmm3INDELI6_15*hetalt
96.4340
93.1353
99.9750
38.6184
7964587800422
100.0000
ciseli-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
93.3626
97.9878
89.1544
38.6200
7207148720187661
6.9635
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6688
93.6820
99.8523
38.6219
1809122202833
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6688
93.6820
99.8523
38.6219
1809122202833
100.0000
hfeng-pmm1SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
38.6228
205220500
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6618
93.5550
99.9821
38.6326
5516380557311
100.0000
ckim-dragenINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.6618
93.5550
99.9821
38.6326
5516380557311
100.0000
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.1890
91.6575
99.0035
38.6331
167015216891716
94.1176
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.6800
99.8524
97.5347
38.6336
74411174381883
1.5957
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.1405
98.5558
99.7323
38.6532
225233223561
16.6667
gduggal-bwaplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
88.4669
80.2296
98.5893
38.6538
62915562998
88.8889
hfeng-pmm1INDELD16_PLUS*hetalt
96.6724
93.6886
99.8525
38.6610
1811122203133
100.0000
ckim-vqsrSNPtvfunc_cds*
99.7367
99.6568
99.8166
38.6616
435615435580
0.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1995
98.5461
99.8616
38.6640
216932216432
66.6667
gduggal-bwafbSNP*HG002compoundhethomalt
99.2787
99.5826
98.9767
38.6655
10737451073611191
81.9820
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
38.6814
13300133000
ndellapenna-hhgaINDELI6_15*hetalt
95.2209
91.6969
99.0267
38.6839
784171078347770
90.9091
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.9397
98.7667
99.1133
38.6843
11292141112891011
0.9901
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.1577
91.3256
99.3255
38.6854
299028482465645
80.3571
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
97.6743
98.7234
96.6472
38.6953
464619896966
95.6522
eyeh-varpipeINDELI16_PLUS*het
50.8662
38.8889
73.5049
38.7042
105716611057381381
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.8071
93.8433
99.9643
38.7051
5533363559322
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8071
93.8433
99.9643
38.7051
5533363559322
100.0000
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.0369
97.2561
98.8304
38.7097
319933844
100.0000
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
67.2691
51.0539
98.5788
38.7173
872836763119
81.8182
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
88.0966
87.6813
88.5158
38.7217
2151730232158928012559
91.3602
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
83.1109
76.3884
91.1308
38.7228
415412844114040
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
67.2854
50.6993
100.0000
38.7234
14514114400
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.5554
89.9881
95.2735
38.7245
2878932032842214101207
85.6028
gduggal-snapfbSNPtiHG002compoundhethomalt
96.6035
99.0803
94.2476
38.7254
7326687340448160
35.7143
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4163
93.6820
99.3151
38.7290
180912220301414
100.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4163
93.6820
99.3151
38.7290
180912220301414
100.0000
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.3367
84.1772
99.8273
38.7302
53210057811
100.0000
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
53.8085
55.7377
52.0085
38.7306
6854246227226
99.5595
ciseli-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
91.1740
97.0537
85.9659
38.7403
448013644907338
1.0914
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.7380
98.6175
84.0244
38.7433
1926271925366364
99.4536
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.1226
86.4620
96.3144
38.7578
495677618319701658
93.8659
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
94.0704
96.0794
92.1437
38.7632
803832810849925888
96.0000
bgallagher-sentieonINDELD16_PLUS*hetalt
96.4203
93.6886
99.3161
38.7676
181112220331414
100.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_triTR_11to50*
96.2675
94.3265
98.2901
38.7683
6351382632311070
63.6364
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.5644
93.4397
99.9052
38.7696
105474105411
100.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.9815
99.4242
98.5428
38.7768
4662274666691
1.4493