PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23551-23600 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | * | hetalt | 95.5238 | 91.4630 | 99.9619 | 38.0544 | 7821 | 730 | 7861 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 87.8398 | 78.3163 | 100.0000 | 38.0563 | 614 | 170 | 682 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 80.1588 | 67.7444 | 98.1441 | 38.0663 | 901 | 429 | 899 | 17 | 16 | 94.1176 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | hetalt | 96.0050 | 92.9126 | 99.3103 | 38.0720 | 1796 | 137 | 2016 | 14 | 14 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6549 | 99.4561 | 99.8544 | 38.0748 | 2743 | 15 | 2743 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3434 | 99.6186 | 97.1004 | 38.0755 | 1306 | 5 | 1306 | 39 | 35 | 89.7436 | |
| ckim-isaac | SNP | * | HG002compoundhet | * | 87.4314 | 80.5166 | 95.6453 | 38.0766 | 20791 | 5031 | 21327 | 971 | 803 | 82.6982 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 38.0769 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4965 | 99.7175 | 99.2765 | 38.0786 | 2471 | 7 | 2470 | 18 | 1 | 5.5556 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 62.0279 | 93.0174 | 46.5270 | 38.0827 | 2944 | 221 | 2954 | 3395 | 3317 | 97.7025 | |
| qzeng-custom | SNP | ti | HG002compoundhet | homalt | 98.8966 | 98.7963 | 98.9971 | 38.0829 | 7305 | 89 | 5429 | 55 | 41 | 74.5455 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6342 | 97.8003 | 99.4823 | 38.0876 | 1156 | 26 | 1153 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.6741 | 97.8739 | 73.0725 | 38.0893 | 6537 | 142 | 6947 | 2560 | 2496 | 97.5000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 12 | 0 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.0952 | 13 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0758 | 99.7696 | 98.3916 | 38.1103 | 3897 | 9 | 3854 | 63 | 6 | 9.5238 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7195 | 94.2517 | 99.3201 | 38.1124 | 1820 | 111 | 2045 | 14 | 14 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9325 | 86.8895 | 99.8788 | 38.1155 | 2366 | 357 | 2473 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3788 | 99.6180 | 99.1407 | 38.1189 | 10691 | 41 | 10730 | 93 | 1 | 1.0753 | |
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | het | 99.0654 | 99.0654 | 99.0654 | 38.1503 | 212 | 2 | 212 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4903 | 97.8659 | 99.1228 | 38.1555 | 321 | 7 | 339 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7253 | 99.7681 | 99.6824 | 38.1649 | 3442 | 8 | 3453 | 11 | 4 | 36.3636 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.5572 | 58.5593 | 98.8827 | 38.1693 | 756 | 535 | 708 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5067 | 90.7170 | 94.3684 | 38.1735 | 14297 | 1463 | 25772 | 1538 | 1472 | 95.7087 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 63.9710 | 53.3687 | 79.8301 | 38.1774 | 705 | 616 | 2632 | 665 | 660 | 99.2481 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1780 | 97.2561 | 99.1176 | 38.1818 | 319 | 9 | 337 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | het | 92.4138 | 87.0130 | 98.5294 | 38.1818 | 67 | 10 | 67 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | * | hetalt | 96.6957 | 94.2059 | 99.3207 | 38.1824 | 1821 | 112 | 2047 | 14 | 14 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | * | hetalt | 96.6957 | 94.2059 | 99.3207 | 38.1824 | 1821 | 112 | 2047 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.0705 | 92.7235 | 83.8622 | 38.1946 | 6193 | 486 | 6184 | 1190 | 1162 | 97.6471 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | het | 93.4304 | 88.3535 | 99.1262 | 38.1960 | 8398 | 1107 | 8395 | 74 | 14 | 18.9189 | |
| ciseli-custom | INDEL | I1_5 | func_cds | het | 78.5185 | 89.8305 | 69.7368 | 38.2114 | 53 | 6 | 53 | 23 | 13 | 56.5217 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7905 | 86.5506 | 100.0000 | 38.2131 | 547 | 85 | 574 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.8050 | 86.0815 | 98.3438 | 38.2217 | 2344 | 379 | 2494 | 42 | 35 | 83.3333 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.3344 | 97.5610 | 99.1202 | 38.2246 | 320 | 8 | 338 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 38.2353 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 38.2353 | 21 | 0 | 21 | 0 | 0 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7709 | 99.7712 | 99.7706 | 38.2436 | 1308 | 3 | 1305 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.3156 | 84.0190 | 100.0000 | 38.2483 | 531 | 101 | 557 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9532 | 99.9532 | 99.9531 | 38.2523 | 2137 | 1 | 2133 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.1147 | 86.7089 | 98.2394 | 38.2609 | 548 | 84 | 558 | 10 | 9 | 90.0000 | |