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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
23301-23350 / 86044 show all
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4244
62.1108
92.8275
37.1477
363122158943691673
97.3951
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
37.8106
46.6667
31.7797
37.1505
6372300644513
79.6584
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50*
98.8379
99.8261
97.8691
37.1532
344463215707
10.0000
gduggal-bwafbINDELD1_5func_cds*
98.7421
98.7421
98.7421
37.1542
157215721
50.0000
gduggal-snapvardSNP*HG002compoundhethomalt
89.8866
82.8510
98.2279
37.1566
893318497594137100
72.9927
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5502
99.2026
99.9003
37.1632
1803814518035183
16.6667
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3283
99.2191
99.4377
37.1644
18041142180381022
1.9608
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4656
99.3180
99.6136
37.1650
66994667032625
96.1538
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.3079
82.7701
83.8526
37.1677
1511331461517929232748
94.0130
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50*
98.1542
97.8551
98.4553
37.1727
33767433785335
66.0377
ciseli-customINDEL*func_cds*
84.1100
83.3708
84.8624
37.1758
371743706630
45.4545
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.2708
98.9378
99.6061
37.1789
10618114106204229
69.0476
dgrover-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9833
96.5224
99.4891
37.1848
124945136377
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4166
67.7028
90.3846
37.1872
485723176587069
98.5714
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5007
97.2896
99.7423
37.1878
272876270977
100.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.3744
99.5648
99.1847
37.2000
3889173893327
21.8750
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
73.2832
58.3269
98.5549
37.2051
753538682108
80.0000
anovak-vgSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
97.9681
98.4772
97.4643
37.2197
27164227297152
73.2394
astatham-gatkINDELI6_15HG002compoundhet*
94.7145
93.3113
96.1606
37.2227
81895878190327325
99.3884
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9223
92.1642
100.0000
37.2242
5434462549100
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9223
92.1642
100.0000
37.2242
5434462549100
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4486
61.1425
91.9567
37.2269
443128164413386340
88.0829
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
52.1457
98.9446
35.4015
37.2279
3754388708669
94.4915
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
84.7595
74.5335
98.2379
37.2350
13584646691212
100.0000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
93.2439
87.5263
99.7608
37.2372
1249178125130
0.0000
hfeng-pmm2SNPtiHG002compoundhethet
96.7284
93.7822
99.8656
37.2373
89145918916121
8.3333
ltrigg-rtg2INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
90.9072
83.7989
99.3333
37.2385
1502914911
100.0000
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6121
99.2918
99.9344
37.2432
10656761065671
14.2857
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.1124
89.0961
99.7271
37.2432
6217673122
100.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5118
99.8232
99.2024
37.2444
7342137338595
8.4746
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.1654
99.5545
98.7794
37.2444
1810281181272247
3.1250
ndellapenna-hhgaSNPtiHG002compoundhethet
98.2624
96.9805
99.5786
37.2500
921828792163921
53.8462
mlin-fermikitSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.3589
97.3161
99.4242
37.2504
65631816562385
13.1579
ltrigg-rtg2INDELI16_PLUSHG002compoundhethetalt
90.2840
82.6087
99.5316
37.2520
1729364170088
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.4116
99.0616
99.7639
37.2813
4645444649115
45.4545
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
89.8955
81.6456
100.0000
37.2822
51611654000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.3197
98.9592
99.6829
37.2866
11314119113173617
47.2222
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
82.5065
98.1366
71.1712
37.2881
15831586464
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2558
98.8879
99.6265
37.2904
66697566682512
48.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
64.0965
47.4352
98.7989
37.2929
3403377128793530
85.7143
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.0674
99.0875
99.0472
37.3044
7384687381710
0.0000
asubramanian-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.2682
92.0384
98.7330
37.3051
163014121042726
96.2963
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.6672
99.8841
99.4512
37.3053
344643443192
10.5263
hfeng-pmm3SNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
37.3089
205220500
hfeng-pmm3INDELI6_15func_cds*
98.8235
97.6744
100.0000
37.3134
4214200
mlin-fermikitINDELI6_15func_cds*
96.4706
95.3488
97.6190
37.3134
4124111
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
90.7836
84.1298
98.5804
37.3201
235944523613427
79.4118