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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
23201-23250 / 86044 show all
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.0211
84.5394
98.5791
36.6641
80491472804811698
84.4828
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
76.5108
62.6506
98.2456
36.6667
52315611
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.3832
99.0868
99.6813
36.6712
1063498106353419
55.8824
asubramanian-gatkSNPtvfunc_cds*
99.5422
99.4967
99.5877
36.6971
4349224348180
0.0000
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
82.1053
96.8944
71.2329
36.7052
15651566363
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.6842
98.7578
72.6027
36.7052
15921596060
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.9950
99.9034
98.1030
36.7067
724077240140139
99.2857
gduggal-snapplatSNP*func_cdshet
99.3276
99.2653
99.3900
36.7079
110798211079684
5.8824
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7023
95.9815
99.4860
36.7100
124252135577
100.0000
ckim-vqsrSNP*func_cdshet
99.7448
99.8029
99.6867
36.7154
111392211136350
0.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7211
99.6873
99.7550
36.7324
7332237328184
22.2222
gduggal-snapplatSNPtiHG002compoundhethomalt
95.6482
94.5361
96.7868
36.7388
69904046928230158
68.6957
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.3003
99.8758
98.7314
36.7417
7238972389392
98.9247
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.3785
91.3011
99.8371
36.7431
2414230245143
75.0000
jlack-gatkSNPtiHG002compoundhet*
99.6570
99.7425
99.5716
36.7466
1743345174317522
29.3333
rpoplin-dv42INDELI6_15func_cds*
97.6744
97.6744
97.6744
36.7647
4214211
100.0000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.5440
84.4657
99.9171
36.7662
2300423241122
100.0000
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.9716
99.4894
98.4590
36.7681
7210377220113103
91.1504
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
34.1360
27.5399
44.8870
36.7812
75919978341024846
82.6172
hfeng-pmm1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9703
99.9703
99.9703
36.7854
67432674322
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.1277
98.3122
99.9569
36.7876
233040231711
100.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
98.1627
97.3958
98.9418
36.7893
187518720
0.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.9120
84.3420
89.6435
36.7917
1540028591539017781740
97.8628
qzeng-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
95.6648
97.6879
93.7238
36.7934
169040179212021
17.5000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5945
99.3642
99.8259
36.7938
171911172033
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5654
99.3064
99.8258
36.8073
171812171933
100.0000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.9050
98.7578
72.9358
36.8116
15921595959
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4204
99.1329
99.7095
36.8209
171515171654
80.0000
mlin-fermikitINDELD16_PLUSHG002compoundhet*
72.6643
69.4575
76.1816
36.8312
16267151628509505
99.2141
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.7626
99.9133
99.6124
36.8335
461244626187
38.8889
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5138
99.1122
99.9186
36.8380
245622245521
50.0000
ltrigg-rtg1SNP*HG002complexvarhetalt
98.8749
99.0323
98.7179
36.8421
307330844
100.0000
ltrigg-rtg1SNPtvHG002complexvarhetalt
98.8749
99.0323
98.7179
36.8421
307330844
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
71.0383
61.9048
83.3333
36.8421
1381022
100.0000
anovak-vgINDELD6_15tech_badpromoters*
62.0690
52.9412
75.0000
36.8421
98933
100.0000
hfeng-pmm3INDELI6_15func_cdshet
100.0000
100.0000
100.0000
36.8421
2402400
jli-customINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
95.6522
91.6667
100.0000
36.8421
1111200
ckim-dragenINDELI6_15HG002compoundhet*
93.2228
91.6135
94.8896
36.8488
80407368040433432
99.7691
gduggal-bwafbINDEL*HG002compoundhethet
91.2904
85.5154
97.9020
36.8528
350159330518654528
80.7339
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.3482
99.9034
98.7991
36.8548
7240772408887
98.8636
gduggal-bwavardSNPtvfunc_cds*
99.0223
98.5358
99.5136
36.8583
4307644296219
42.8571
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.8651
96.6463
99.1150
36.8715
3171133633
100.0000
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8256
93.9864
99.8416
36.8816
2485159252244
100.0000
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
82.4503
70.7523
98.7826
36.8825
167469256877
100.0000
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
36.4602
27.1762
55.3790
36.8827
25668613591095912
83.2877
jli-customSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
jli-customSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
36.8852
308230800
ckim-isaacSNPtvHG002compoundhethomalt
88.3010
79.3093
99.5923
36.8889
268770126871111
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.1102
96.2906
100.0000
36.8910
124648136000
hfeng-pmm2INDELI6_15HG002compoundhet*
95.0368
93.1632
96.9873
36.8937
81766008177254252
99.2126