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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
23051-23100 / 86044 show all
gduggal-snapvardSNPtvfunc_cds*
98.8510
98.5129
99.1913
36.1464
43066542933510
28.5714
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
98.7842
98.0306
99.5494
36.1496
2240452430116
54.5455
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
92.8220
96.7435
89.2061
36.1513
70112367000847807
95.2774
hfeng-pmm1INDEL*func_cdshomalt
100.0000
100.0000
100.0000
36.1582
226022600
ckim-isaacINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
96.6320
94.0056
99.4094
36.1609
20231292020129
75.0000
qzeng-customINDELI16_PLUSHG002compoundhethetalt
79.5048
66.7941
98.1900
36.1641
139869510852016
80.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6240
99.5376
99.7106
36.1655
17228172355
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
90.5987
83.2905
99.3127
36.1667
226845523121616
100.0000
ckim-gatkINDELD6_15HG002compoundhet*
95.5310
94.8178
96.2551
36.1757
85634688559333330
99.0991
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.1489
40.2731
63.0429
36.1826
23893543484828422348
82.6179
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
73.5605
66.5605
82.2059
36.1952
6273152236484477
98.5537
ckim-vqsrINDELD6_15HG002compoundhet*
95.5291
94.7736
96.2967
36.1965
85594728555329326
99.0881
ckim-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.7820
99.5649
100.0000
36.1989
274612274600
gduggal-bwaplatSNPtv*het
98.5255
97.5640
99.5062
36.2003
577282144145775772866351
12.2470
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.6760
92.6622
98.8925
36.2012
152812115181717
100.0000
ckim-gatkSNPtiHG002compoundhet*
99.4312
99.0159
99.8500
36.2044
17306172173062621
80.7692
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8911
99.7825
100.0000
36.2077
27526275200
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7975
99.7110
99.8843
36.2126
17255172622
100.0000
gduggal-bwavardINDELD16_PLUSHG002compoundhet*
17.4062
15.1645
20.4258
36.2202
355198635513831372
99.2046
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
98.3190
98.8713
97.7728
36.2216
4385439104
40.0000
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
76.6857
62.3443
99.5964
36.2241
6457390064162621
80.7692
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
97.0831
94.5714
99.7319
36.2393
3311937211
100.0000
rpoplin-dv42SNP*HG002complexvarhetalt
99.1974
99.6774
98.7220
36.2525
309130944
100.0000
rpoplin-dv42SNPtvHG002complexvarhetalt
99.1974
99.6774
98.7220
36.2525
309130944
100.0000
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3632
99.1908
99.5362
36.2528
171614171786
75.0000
jpowers-varprowlSNPtvfunc_cds*
98.8262
99.1993
98.4559
36.2571
4336354336685
7.3529
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4721
99.4737
99.4705
36.2584
13237131577
100.0000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
95.3716
91.7119
99.3355
36.2626
1184107119688
100.0000
ciseli-customINDELD1_5func_cds*
91.8919
96.2264
87.9310
36.2637
1536153214
19.0476
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1453
98.8584
99.4339
36.2670
6668776675380
0.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2190
99.9172
98.5304
36.2675
724167241108107
99.0741
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
qzeng-customINDELD16_PLUSHG002compoundhethomalt
6.1856
100.0000
3.1915
36.2712
80618292
50.5495
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
87.2012
82.9480
91.9141
36.2721
14352951455128122
95.3125
raldana-dualsentieonINDELI6_15*hetalt
94.4979
89.5802
99.9870
36.2816
7660891770011
100.0000
ckim-vqsrINDELI6_15HG002compoundhet*
94.2580
92.3997
96.1926
36.2881
81096678110321319
99.3769
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7712
99.7712
99.7712
36.2974
13083130833
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6211
94.1176
99.2614
36.3011
15529717471313
100.0000
ciseli-customSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
97.6881
99.6496
95.8023
36.3088
1422514156231
50.0000
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
94.9580
90.4000
100.0000
36.3128
1131211400
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
97.8417
95.7746
100.0000
36.3208
136613500
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909
gduggal-bwaplatSNPtifunc_cdshet
99.4112
99.2709
99.5519
36.3268
8442628442384
10.5263
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
63.9253
47.2441
98.8157
36.3273
3360375228373429
85.2941
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.7607
94.8001
96.7410
36.3288
38652123859130125
96.1538
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
jli-customSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
36.3354
205220500