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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
22901-22950 / 86044 show all
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.4646
98.7578
72.2727
35.4839
15921596161
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.5131
87.8165
100.0000
35.4839
5557758000
rpoplin-dv42INDELI1_5func_cds*
99.7214
99.4444
100.0000
35.4839
179118000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
35.4886
13074130700
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8184
99.8912
99.7456
35.4899
27553274571
14.2857
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
74.1595
60.7407
95.1883
35.4926
82534552320
86.9565
asubramanian-gatkSNP*HG002compoundhethomalt
98.0307
96.9672
99.1179
35.4971
1045532710450935
5.3763
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
66.8725
51.0638
96.8586
35.5002
28827614804847
97.9167
ltrigg-rtg1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.6114
90.7236
98.8475
35.5050
146715014581717
100.0000
qzeng-customINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
95.3338
91.6933
99.2754
35.5140
2872613711
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.8861
95.1429
98.6945
35.5219
3331737855
100.0000
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.8861
95.1429
98.6945
35.5219
3331737855
100.0000
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.0460
40.3746
86.4662
35.5308
3885731150180175
97.2222
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.9847
92.4337
99.8195
35.5314
1637134165933
100.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.9847
92.4337
99.8195
35.5314
1637134165933
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.5315
13101131000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4032
98.9855
99.8245
35.5338
341535341262
33.3333
bgallagher-sentieonSNPtiHG002compoundhet*
99.8512
99.8226
99.8798
35.5355
1744731174452114
66.6667
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
96.3317
97.1116
95.5642
35.5358
221966221910398
95.1456
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
78.0254
68.0540
91.4205
35.5394
484022726506160
98.3607
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
81.6959
69.6629
98.7539
35.5422
1868131744
100.0000
ciseli-customSNPtiHG002compoundhethomalt
81.8243
93.1296
72.9667
35.5461
688650868722546564
22.1524
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
85.4215
78.1353
94.2062
35.5484
63861787206512767
52.7559
jli-customSNPtiHG002compoundhet*
99.7826
99.8112
99.7541
35.5495
1744533174454322
51.1628
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
87.5209
83.4104
92.0575
35.5502
14432871472127115
90.5512
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
63.1067
46.2156
99.4565
35.5517
40346936622
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.6106
99.4231
99.7987
35.5602
396423396686
75.0000
gduggal-snapfbINDELI1_5func_cds*
96.9697
97.7778
96.1749
35.5634
176417672
28.5714
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.1948
98.4026
100.0000
35.5649
308530800
mlin-fermikitSNPtiHG002compoundhethomalt
93.7665
98.4176
89.5352
35.5677
72771177281851725
85.1939
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.4107
85.7327
97.8942
35.5826
398466318133939
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.6211
94.4615
98.8818
35.5967
6143661976
85.7143
anovak-vgINDELI6_15HG002compoundhethomalt
34.1743
61.2903
23.6923
35.6011
1912231744513
68.9516
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1995
98.5500
99.8576
35.6051
210731210430
0.0000
ndellapenna-hhgaINDEL*func_cdshomalt
100.0000
100.0000
100.0000
35.6125
226022600
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.9368
91.2482
98.9362
35.6164
6366174488
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8051
99.9133
99.6971
35.6178
461244608142
14.2857
jpowers-varprowlINDELD1_5func_cds*
93.0818
93.0818
93.0818
35.6275
148111481110
90.9091
asubramanian-gatkINDELD16_PLUSHG002compoundhet*
94.4206
93.9769
94.8685
35.6370
22001412200119109
91.5966
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.5857
94.5714
98.6877
35.6419
3311937655
100.0000
gduggal-bwavardINDELI6_15HG002complexvarhomalt
84.0374
73.1466
98.7385
35.6458
888326861119
81.8182
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
63.8782
90.0427
49.4957
35.6465
63370638651650
99.8464
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
88.1323
79.3116
99.1606
35.6652
11129290325992219
86.3636
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
93.1495
88.0107
98.9255
35.6682
131417913811514
93.3333
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1401
94.4708
99.9645
35.6743
5570326563122
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1401
94.4708
99.9645
35.6743
5570326563122
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.5664
97.8336
91.5103
35.6834
70901577071656646
98.4756
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.6295
93.7143
99.7319
35.6897
3282237211
100.0000
dgrover-gatkSNPtiHG002compoundhet*
99.8369
99.8284
99.8455
35.6925
1744830174462721
77.7778
qzeng-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
94.5805
96.4115
92.8177
35.7016
40315134410412
11.5385