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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 454 455 456 457 458 459 460 461 462 ... 1720 1721 » 22851-22900 / 86044 show all
astatham-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
bgallagher-sentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.3312	205	2	205	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.3430	311	2	311	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7688	94.2040	99.4772	35.3452	1219	75	1332	7	7	100.0000
hfeng-pmm2	SNP	*	HG002compoundhet	homalt	99.8887	99.8887	99.8887	35.3481	10770	12	10770	12	11	91.6667
ckim-gatk	INDEL	D16_PLUS	HG002compoundhet	*	95.5256	95.3012	95.7511	35.3496	2231	110	2231	99	96	96.9697
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4087	100.0000	98.8243	35.3599	1427	0	1429	17	10	58.8235
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	88.8218	91.3043	86.4706	35.3612	147	14	147	23	23	100.0000
ciseli-custom	INDEL	I6_15	HG002compoundhet	*	2.2462	1.5497	4.0797	35.3639	136	8640	129	3033	2934	96.7359
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.1871	95.2331	99.2231	35.3659	899	45	894	7	7	100.0000
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.2118	71.5131	99.4866	35.3667	7491	2984	7558	39	39	100.0000
raldana-dualsentieon	SNP	*	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
raldana-dualsentieon	SNP	tv	HG002complexvar	hetalt	99.5138	99.0323	100.0000	35.3684	307	3	307	0	0
bgallagher-sentieon	INDEL	D16_PLUS	HG002compoundhet	*	95.0525	94.7886	95.3179	35.3692	2219	122	2219	109	106	97.2477
jli-custom	INDEL	I6_15	HG002compoundhet	*	95.9804	94.5419	97.4633	35.3700	8297	479	8299	216	208	96.2963
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0651	94.4072	99.8769	35.3752	2397	142	2434	3	3	100.0000
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
gduggal-snapfb	INDEL	I6_15	*	*	76.3979	68.7024	86.0349	35.3787	17054	7769	17786	2887	2798	96.9172
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	56.8282	39.6923	100.0000	35.3808	258	392	263	0	0
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	97.5990	96.0558	99.1926	35.3810	6478	266	6511	53	6	11.3208
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	32.2728	22.6804	55.9262	35.3818	792	2700	1576	1242	1045	84.1385
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	79.1045	98.7578	65.9751	35.3887	159	2	159	82	82	100.0000
ckim-vqsr	INDEL	D16_PLUS	HG002compoundhet	*	95.5217	95.2157	95.8298	35.3889	2229	112	2229	97	95	97.9381
jli-custom	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9407	99.9110	99.9703	35.3939	6739	6	6739	2	2	100.0000
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7240	99.4783	99.9709	35.3959	3432	18	3434	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	*	92.8541	92.1401	93.5792	35.3980	2157	184	2157	148	143	96.6216
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6431	99.2888	100.0000	35.3991	698	5	688	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1148	92.5561	99.9581	35.3992	2350	189	2386	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9629	99.9555	99.9703	35.4085	6742	3	6742	2	2	100.0000
cchapple-custom	SNP	ti	HG002compoundhet	*	99.2669	98.9816	99.5539	35.4095	17300	178	17406	78	64	82.0513
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.5228	95.7439	99.3691	35.4149	7716	343	7718	49	49	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.5228	95.7439	99.3691	35.4149	7716	343	7718	49	49	100.0000
ckim-dragen	SNP	tv	tech_badpromoters	het	96.8750	93.9394	100.0000	35.4167	31	2	31	0	0
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	98.2135	97.8118	98.6185	35.4245	2235	50	2213	31	21	67.7419
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	65.9412	85.6091	53.6220	35.4284	4069	684	4049	3502	3279	93.6322
gduggal-bwavard	SNP	*	HG002compoundhet	homalt	91.3621	84.3072	99.7055	35.4356	9090	1692	7788	23	19	82.6087
astatham-gatk	INDEL	D16_PLUS	HG002compoundhet	*	95.6540	95.4293	95.8798	35.4392	2234	107	2234	96	94	97.9167
ckim-vqsr	SNP	*	HG002compoundhet	homalt	98.6617	97.4309	99.9239	35.4419	10505	277	10504	8	7	87.5000
jlack-gatk	INDEL	D6_15	HG002compoundhet	*	92.1390	91.0641	93.2396	35.4470	8224	807	8220	596	552	92.6174
ndellapenna-hhga	INDEL	I6_15	HG002compoundhet	*	93.3379	91.5109	95.2392	35.4681	8031	745	8042	402	334	83.0846
jmaeng-gatk	INDEL	D16_PLUS	HG002compoundhet	*	94.6939	94.1478	95.2463	35.4713	2204	137	2204	110	109	99.0909
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.5874	94.5714	98.6911	35.4730	331	19	377	5	5	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.6731	91.7051	100.0000	35.4740	199	18	211	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.6731	91.7051	100.0000	35.4740	199	18	211	0	0
ltrigg-rtg1	INDEL	*	func_cds	*	99.3231	98.8764	99.7738	35.4745	440	5	441	1	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	HG002compoundhet	*	95.7397	95.5147	95.9657	35.4749	2236	105	2236	94	91	96.8085

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