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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 452 453 454 455 456 457 458 459 460 ... 1720 1721 » 22751-22800 / 86044 show all
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	22.9356	12.9887	97.9381	34.8993	103	690	95	2	2	100.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	54.7235	48.0480	63.5530	34.9033	640	692	3742	2146	1725	80.3821
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	96.7812	94.0000	99.7319	34.9040	329	21	372	1	1	100.0000
ckim-dragen	SNP	*	func_cds	het	99.2748	99.9642	98.5949	34.9057	11157	4	11157	159	1	0.6289
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	85.9187	79.7297	93.1494	34.9226	118	30	979	72	70	97.2222
ckim-isaac	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	82.4180	70.7101	98.7723	34.9310	1673	693	1770	22	18	81.8182
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	50.1159	99.4924	33.4936	34.9322	196	1	209	415	385	92.7711
hfeng-pmm1	SNP	*	HG002compoundhet	homalt	99.9026	99.9073	99.8980	34.9324	10772	10	10772	11	11	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	93.3542	87.6993	99.7886	34.9381	385	54	472	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3569	98.7220	100.0000	34.9474	309	4	309	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7743	99.7743	99.7743	34.9486	442	1	442	1	1	100.0000
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.1201	81.4606	98.3693	34.9531	13608	3097	14116	234	204	87.1795
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.1201	81.4606	98.3693	34.9531	13608	3097	14116	234	204	87.1795
qzeng-custom	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	88.1791	79.5031	98.9806	34.9542	1408	363	2039	21	15	71.4286
ndellapenna-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	76.9320	62.9626	98.8676	34.9557	6992	4113	6461	74	65	87.8378
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	62.9012	59.7110	66.4516	34.9559	1033	697	1030	520	432	83.0769
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.4586	91.4533	99.8307	34.9752	2322	217	2359	4	3	75.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1775	85.6492	99.7831	34.9788	376	63	460	1	1	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	77.9566	64.5649	98.3573	34.9800	512	281	479	8	4	50.0000
ciseli-custom	INDEL	D16_PLUS	HG002compoundhet	*	6.2397	5.0406	8.1875	34.9864	118	2223	117	1312	1251	95.3506
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	91.8719	84.9658	100.0000	34.9929	373	66	457	0	0
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1375	92.6622	99.8837	34.9962	1528	121	1718	2	2	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.4937	90.2365	99.1726	34.9981	1488	161	1678	14	14	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	35.0000	12	0	13	0	0
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	59.4595	45.8333	84.6154	35.0000	11	13	11	2	2	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	35.0000	12	0	13	0	0
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2363	98.5269	99.9560	35.0014	4548	68	4544	2	1	50.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	71.8529	57.2932	96.3338	35.0041	762	568	762	29	27	93.1034
ckim-dragen	SNP	*	HG002compoundhet	homalt	99.8656	99.8980	99.8332	35.0217	10771	11	10771	18	18	100.0000
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.1212	96.7368	99.5458	35.0221	2668	90	2630	12	9	75.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5952	84.4937	100.0000	35.0348	534	98	560	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	91.5952	84.4937	100.0000	35.0348	534	98	560	0	0
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.2232	98.5968	99.8577	35.0385	2108	30	2105	3	0	0.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	83.2773	71.8970	98.9378	35.0419	1228	480	1304	14	10	71.4286
jmaeng-gatk	SNP	*	HG002compoundhet	homalt	99.4551	99.0262	99.8877	35.0471	10677	105	10676	12	11	91.6667
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1713	92.6560	99.9638	35.0529	5463	433	5525	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1713	92.6560	99.9638	35.0529	5463	433	5525	2	2	100.0000
egarrison-hhga	INDEL	*	func_cds	homalt	100.0000	100.0000	100.0000	35.0575	226	0	226	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-gatk	SNP	*	HG002compoundhet	homalt	99.4644	99.0354	99.8971	35.0629	10678	104	10677	11	10	90.9091
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	78.4745	65.1883	98.5629	35.0700	779	416	823	12	11	91.6667
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9258	99.8517	100.0000	35.0718	6735	10	6735	0	0
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.0731	311	2	311	0	0
mlin-fermikit	INDEL	D6_15	*	hetalt	78.2531	64.4238	99.6427	35.0794	5266	2908	5298	19	18	94.7368
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
gduggal-bwafb	INDEL	I6_15	func_cds	*	90.0000	83.7209	97.2973	35.0877	36	7	36	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.0997	3417	33	3414	3	0	0.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	92.1781	85.6492	99.7845	35.1049	376	63	463	1	1	100.0000

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